Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLB9Y_RS02150 Genome accession   NZ_CP177162
Coordinates   503980..504450 (-) Length   156 a.a.
NCBI ID   WP_411813086.1    Uniprot ID   -
Organism   Chryseobacterium scophthalmum strain LGBM4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498980..509450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLB9Y_RS02135 (ACLB9Y_02135) der 500080..501390 (+) 1311 WP_411812086.1 ribosome biogenesis GTPase Der -
  ACLB9Y_RS02140 (ACLB9Y_02140) upp 501467..502120 (+) 654 WP_411812087.1 uracil phosphoribosyltransferase -
  ACLB9Y_RS02145 (ACLB9Y_02145) - 502343..503803 (+) 1461 WP_411812088.1 hypothetical protein -
  ACLB9Y_RS02150 (ACLB9Y_02150) comF 503980..504450 (-) 471 WP_411813086.1 ComF family protein Machinery gene
  ACLB9Y_RS02155 (ACLB9Y_02155) - 504577..504633 (-) 57 Protein_401 hypothetical protein -
  ACLB9Y_RS02160 (ACLB9Y_02160) - 504898..506370 (-) 1473 WP_411812089.1 helix-turn-helix domain-containing protein -
  ACLB9Y_RS02165 (ACLB9Y_02165) aceB 506497..508071 (+) 1575 WP_411812090.1 malate synthase A -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18152.88 Da        Isoelectric Point: 9.5798

>NTDB_id=1085686 ACLB9Y_RS02150 WP_411813086.1 503980..504450(-) (comF) [Chryseobacterium scophthalmum strain LGBM4]
MQFEKENLSRKIIHELKYKSREKAGKILAEWTAERLDFKNEKPDVLVSVPLHPKKLKERGYNQLHLFTETLSKFYEIPFS
HDLIKRNHYSKAQALKDKQHRLDTQNTFSITENISGKHILLIDDVFTTGNTIASIAWEILKSGDNKVSVLVMAMDE

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1085686 ACLB9Y_RS02150 WP_411813086.1 503980..504450(-) (comF) [Chryseobacterium scophthalmum strain LGBM4]
ATGCAGTTTGAAAAGGAAAATTTAAGCAGGAAAATCATCCACGAATTAAAATATAAAAGTCGAGAAAAAGCAGGAAAGAT
TTTAGCTGAATGGACGGCAGAACGTTTAGATTTCAAAAATGAAAAACCTGATGTATTGGTTTCTGTTCCATTGCATCCGA
AAAAACTAAAAGAGAGAGGTTATAATCAACTGCATTTGTTTACAGAAACTTTATCAAAGTTTTATGAGATTCCTTTTAGT
CATGATTTAATTAAAAGAAATCATTATTCAAAAGCACAGGCTTTGAAAGACAAACAACATCGTCTTGATACTCAGAATAC
TTTTTCCATCACAGAAAATATTTCGGGGAAACATATTTTATTGATTGATGATGTTTTCACCACCGGAAATACAATTGCTT
CAATTGCCTGGGAAATTTTGAAATCCGGAGACAACAAAGTGAGTGTTTTGGTAATGGCAATGGATGAATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(22-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

59.615

100

0.596

Multiple sequence alignment