Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACLHWC_RS12875 Genome accession   NZ_CP177122
Coordinates   2675877..2677718 (-) Length   613 a.a.
NCBI ID   WP_193989969.1    Uniprot ID   -
Organism   Vagococcus salmoninarum strain 2022-116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2670877..2682718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHWC_RS12850 (ACLHWC_12850) yhfZ 2670970..2671893 (-) 924 WP_193989963.1 GntR family transcriptional regulator YhfZ -
  ACLHWC_RS12855 (ACLHWC_12855) - 2671904..2673001 (-) 1098 WP_126779554.1 aminotransferase class V-fold PLP-dependent enzyme -
  ACLHWC_RS12860 (ACLHWC_12860) - 2673007..2673888 (-) 882 WP_193989965.1 phosphotriesterase -
  ACLHWC_RS12865 (ACLHWC_12865) - 2673903..2675219 (-) 1317 WP_126779559.1 YhfT family protein -
  ACLHWC_RS12870 (ACLHWC_12870) - 2675240..2675605 (-) 366 WP_193989967.1 DUF2620 domain-containing protein -
  ACLHWC_RS12875 (ACLHWC_12875) rcrQ 2675877..2677718 (-) 1842 WP_193989969.1 ABC transporter ATP-binding protein Regulator
  ACLHWC_RS12880 (ACLHWC_12880) - 2677734..2680115 (-) 2382 WP_193989971.1 ATP-binding cassette domain-containing protein -
  ACLHWC_RS12885 (ACLHWC_12885) - 2680112..2680561 (-) 450 WP_126779573.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLHWC_RS12890 (ACLHWC_12890) - 2680814..2681593 (-) 780 WP_193989980.1 ABC transporter ATP-binding protein -
  ACLHWC_RS12895 (ACLHWC_12895) - 2681612..2682652 (-) 1041 WP_193989983.1 glycine betaine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 68066.68 Da        Isoelectric Point: 5.9111

>NTDB_id=1085451 ACLHWC_RS12875 WP_193989969.1 2675877..2677718(-) (rcrQ) [Vagococcus salmoninarum strain 2022-116]
MTEKNQNRPRGGGGHGPMAKVEKAKDFKGTIKKLAAYIGSYKLPMILVVIFAIASTVFNIWGPKILSSAITELFNGLIKK
YQGTGGIDFTKIGGILLFMLGLYVVAALFGIFQGWIMSTISQKITYRMRKEISEKINRMPMNYFESRTTGEVLSRITNDV
DTLGQSLNQSITQLITSTFTIIGVIIMMLSISVKMTGIAVLIVPISLILIMIVVKNSQKYFKTQQEYLGVINGKVEETIG
GYNIVRLFNEEENALKEFKEQNDILFKSAWKSQFLSGLMQPIMNFVGNLGYVAVAIFGGMMAYSGAITVGDIQAFIQYVR
NLTQPIAQLAQVSNMLQSMAAAAERVFEFLGEEEEAQFAENPVKLDHVEGMVDFEHVNFGYTADRNIINDFSSHVEPGQM
VAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIEGHNIKDFNRGDLRKNIGMVLQDTWLFKGTIMENLRYGRLEATDEEVYE
AAKAAHVHQFIQTLPGGYNMELNEESSNISQGQKQLLTIARAILAEKPILILDEATSSVDTRTEGLIQEAMNNLMSGRTS
FVIAHRLSTIKDADKILYMQDGDIKEQGTHDELLAAGGYYAALYNSQFEEVAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1085451 ACLHWC_RS12875 WP_193989969.1 2675877..2677718(-) (rcrQ) [Vagococcus salmoninarum strain 2022-116]
ATGACAGAAAAAAATCAAAATCGCCCTCGTGGCGGCGGTGGACATGGACCGATGGCGAAAGTCGAAAAAGCCAAAGATTT
CAAAGGAACAATTAAGAAACTAGCAGCCTATATTGGTAGCTACAAACTTCCAATGATTCTAGTAGTCATCTTTGCAATTG
CATCGACGGTCTTTAATATCTGGGGACCGAAAATTTTATCATCAGCCATTACTGAATTATTTAATGGCTTAATTAAAAAA
TATCAAGGCACAGGCGGCATTGATTTCACGAAAATTGGTGGCATCTTGCTCTTCATGCTAGGCTTGTATGTTGTGGCAGC
CCTCTTTGGAATTTTCCAAGGTTGGATCATGTCGACGATTTCTCAAAAAATCACTTACCGAATGCGGAAAGAAATCTCTG
AGAAAATTAACCGGATGCCGATGAATTATTTTGAAAGTCGGACAACTGGTGAAGTCTTATCACGGATAACGAACGATGTG
GATACACTTGGTCAATCCTTGAACCAATCAATTACCCAATTGATTACGTCAACTTTCACGATTATTGGTGTCATTATTAT
GATGTTATCAATCTCAGTTAAAATGACCGGGATTGCCGTCTTAATTGTGCCGATTTCATTAATTCTAATTATGATCGTCG
TGAAAAACTCACAAAAATACTTTAAAACCCAACAAGAATATCTTGGGGTAATTAATGGGAAAGTTGAAGAAACAATCGGT
GGTTATAACATTGTTCGTCTCTTTAACGAAGAAGAAAATGCTTTAAAAGAATTTAAAGAACAAAATGATATTTTATTTAA
ATCAGCTTGGAAATCACAATTTCTATCTGGTTTAATGCAACCAATCATGAACTTTGTCGGTAACTTAGGTTACGTGGCAG
TCGCGATTTTCGGGGGAATGATGGCATACAGTGGCGCGATTACCGTCGGTGACATCCAAGCCTTTATTCAATACGTTAGA
AACTTAACCCAACCGATTGCCCAATTAGCCCAAGTATCTAACATGTTACAATCAATGGCAGCAGCAGCGGAACGAGTCTT
TGAATTCTTAGGTGAAGAAGAAGAAGCTCAGTTTGCTGAAAACCCAGTCAAGTTAGATCACGTTGAAGGTATGGTTGATT
TTGAACATGTTAACTTTGGTTATACGGCAGATCGTAACATTATTAATGACTTTAGCTCACACGTTGAGCCAGGTCAAATG
GTGGCGATTGTGGGACCAACTGGCGCTGGTAAAACAACGATGGTTAAACTTTTAATGCGTTTCTACGATGTTAATAGTGG
CGCTATCAAAATTGAAGGCCATAATATTAAAGACTTTAATCGCGGTGACTTACGGAAAAACATCGGCATGGTCTTACAAG
ATACTTGGTTATTCAAAGGAACGATTATGGAGAACTTACGTTATGGTCGTCTAGAAGCAACGGATGAAGAAGTTTACGAA
GCTGCTAAAGCCGCTCACGTTCACCAATTTATCCAAACCTTACCTGGTGGCTATAATATGGAACTAAATGAGGAATCTTC
GAATATTTCCCAAGGGCAAAAGCAATTGTTGACGATTGCCCGGGCAATCTTAGCTGAGAAACCAATTTTAATTCTTGATG
AAGCAACCTCATCTGTTGATACGCGGACAGAAGGTTTGATTCAAGAAGCCATGAATAACTTGATGTCAGGACGGACGTCA
TTTGTCATTGCTCACCGTCTATCAACAATTAAAGACGCTGACAAGATTCTTTACATGCAAGATGGGGACATTAAAGAGCA
AGGAACCCATGATGAATTATTAGCGGCAGGTGGTTATTATGCAGCGTTGTATAATTCACAGTTTGAAGAAGTGGCTGAAT
AA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-325)

ABC transporter (ABC_tran)

(389-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.195

95.595

0.489

Multiple sequence alignment