Detailed information NTG1085199

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACLIMI_RS09155
• Genome accession: NZ_CP177045
• Coordinates: 1766670..1767449 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain MPB11
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1761670..1772449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLIMI_RS09135 (ACLIMI_09135)	trmFO	1762367..1763671 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACLIMI_RS09140 (ACLIMI_09140)	xerC	1763738..1764652 (+)	915	WP_003181750.1	tyrosine recombinase XerC	-
ACLIMI_RS09145 (ACLIMI_09145)	hslV	1764666..1765211 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
ACLIMI_RS09150 (ACLIMI_09150)	hslU	1765228..1766631 (+)	1404	WP_003181754.1	HslU--HslV peptidase ATPase subunit	-
ACLIMI_RS09155 (ACLIMI_09155)	codY	1766670..1767449 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACLIMI_RS09160 (ACLIMI_09160)	flgB	1767803..1768192 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
ACLIMI_RS09165 (ACLIMI_09165)	flgC	1768192..1768644 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
ACLIMI_RS09170 (ACLIMI_09170)	fliE	1768658..1768975 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
ACLIMI_RS09175 (ACLIMI_09175)	fliF	1769026..1770627 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
ACLIMI_RS09180 (ACLIMI_09180)	fliG	1770641..1771657 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
ACLIMI_RS09185 (ACLIMI_09185)	fliH	1771641..1772408 (+)	768	WP_016885763.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=1085199 ACLIMI_RS09155 WP_003181756.1 1766670..1767449(+) (codY) [Bacillus licheniformis strain MPB11]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1085199 ACLIMI_RS09155 WP_003181756.1 1766670..1767449(+) (codY) [Bacillus licheniformis strain MPB11]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467