Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACLIMA_RS15330 Genome accession   NZ_CP177039
Coordinates   2886501..2888897 (-) Length   798 a.a.
NCBI ID   WP_003183932.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2881501..2893897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS15310 (ACLIMA_15310) - 2884445..2885503 (-) 1059 WP_003183924.1 AI-2E family transporter -
  ACLIMA_RS15315 (ACLIMA_15315) - 2885594..2885725 (-) 132 WP_003183926.1 YrzQ family protein -
  ACLIMA_RS15320 (ACLIMA_15320) - 2885741..2885932 (-) 192 WP_003183928.1 hypothetical protein -
  ACLIMA_RS15325 (ACLIMA_15325) - 2885948..2886412 (-) 465 WP_003183930.1 PRC-barrel domain-containing protein -
  ACLIMA_RS15330 (ACLIMA_15330) recD2 2886501..2888897 (-) 2397 WP_003183932.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACLIMA_RS15335 (ACLIMA_15335) - 2888948..2889598 (-) 651 WP_003183935.1 tetratricopeptide repeat protein -
  ACLIMA_RS15340 (ACLIMA_15340) mnmA 2889692..2890810 (-) 1119 WP_003183938.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACLIMA_RS15345 (ACLIMA_15345) - 2890916..2892055 (-) 1140 WP_003183940.1 cysteine desulfurase family protein -
  ACLIMA_RS15350 (ACLIMA_15350) cymR 2892076..2892492 (-) 417 WP_003183943.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89745.34 Da        Isoelectric Point: 4.9464

>NTDB_id=1085066 ACLIMA_RS15330 WP_003183932.1 2886501..2888897(-) (recD2) [Bacillus licheniformis strain MPB04]
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLAAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1085066 ACLIMA_RS15330 WP_003183932.1 2886501..2888897(-) (recD2) [Bacillus licheniformis strain MPB04]
ATGCAGCGCCATAACCCGGACCAGATCGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTAACGGCTGTCATATATCA
TAATGAAACAAACCTGTATACCGTACTGAAAGTAAAAGTGGAAGAAACATCAGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACATTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTCAAAAAGGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTCAATAAGCTGGGGGAAGGGGCAATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTCCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAG
GGGCTCGAGCAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAAACCAGTCAGC
AGGCGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAAGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGTCTGCCGGCCGT
TACGATTCACAGGCTTCTCGGCTGGAACGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGC
TCATTATTGATGAAACGAGCATGCTTGATATATGGCTTGCCAACCAATTATTCAAGGCGATCCCCGATCGGATACAGGTG
ATCATGGTCGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTGTTGGCATCGAATGTGAT
TCCTTCTGTCAGATTAACCGACATTTACAGACAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCACGAAATGAAACAGG
GAAAGCTTCCGGAAAACTTGGCCGCCCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATCAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGGTTTTGGCTCCGATGTACAGAGG
AGCGGCCGGCATCAATGAGTTGAACGCCCTTTTGCAGGGCATACTGAATCCGCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGAGATGTCGTGTACCGTACCGGAGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCATAACGTGTTTAACGGTGAC
ATGGGCGAGATCGTCTCGATTTTTTATGCGAAAGAAAATACGGAAAAAGAAGATATGGCCGTTGTCTCTTTCGACGGGAA
TGAAATCACGTTTGCAAAAAAAGATTTCAACCAGTTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAAGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCTATTACA
AGAAGCAAAAAATTCCTGATTCTGTGCGGCGAAGAGGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCAGAAAG
GCAGACATCGCTTAAAAGACGGCTTCAGCAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTTCAAAAAGAGCTGC
CATTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.727

100

0.818

Multiple sequence alignment