Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | ACLINY_RS18860 | Genome accession | NZ_CP176864 |
| Coordinates | 3665254..3666033 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus thuringiensis strain MPB19 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3630932..3704857 | 3665254..3666033 | within | 0 |
Gene organization within MGE regions
Location: 3630932..3704857
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLINY_RS18710 (ACLINY_18710) | - | 3631275..3632945 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| ACLINY_RS18715 (ACLINY_18715) | dapA | 3633711..3634589 (-) | 879 | WP_263696149.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| ACLINY_RS18720 (ACLINY_18720) | dapG | 3634601..3635833 (-) | 1233 | WP_000692470.1 | aspartate kinase | - |
| ACLINY_RS18725 (ACLINY_18725) | asd | 3635857..3636903 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| ACLINY_RS18730 (ACLINY_18730) | dpaB | 3637054..3637653 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| ACLINY_RS18735 (ACLINY_18735) | dpaA | 3637650..3638552 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| ACLINY_RS18740 (ACLINY_18740) | - | 3638827..3639078 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| ACLINY_RS18745 (ACLINY_18745) | - | 3639205..3640446 (-) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| ACLINY_RS18750 (ACLINY_18750) | - | 3640533..3641432 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| ACLINY_RS18755 (ACLINY_18755) | pnp | 3641584..3643722 (-) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| ACLINY_RS18760 (ACLINY_18760) | rpsO | 3643883..3644152 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| ACLINY_RS18765 (ACLINY_18765) | ribF | 3644253..3645224 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ACLINY_RS18770 (ACLINY_18770) | truB | 3645268..3646191 (-) | 924 | WP_000399337.1 | tRNA pseudouridine(55) synthase TruB | - |
| ACLINY_RS18775 (ACLINY_18775) | rbfA | 3646278..3646634 (-) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| ACLINY_RS18780 (ACLINY_18780) | - | 3646650..3646931 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| ACLINY_RS18785 (ACLINY_18785) | infB | 3646928..3648988 (-) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| ACLINY_RS18790 (ACLINY_18790) | - | 3648993..3649304 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| ACLINY_RS18795 (ACLINY_18795) | rnpM | 3649305..3649577 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| ACLINY_RS18800 (ACLINY_18800) | nusA | 3649589..3650695 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| ACLINY_RS18805 (ACLINY_18805) | rimP | 3650713..3651183 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| ACLINY_RS18810 (ACLINY_18810) | - | 3651516..3655817 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| ACLINY_RS18815 (ACLINY_18815) | - | 3655942..3657642 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| ACLINY_RS18820 (ACLINY_18820) | rseP | 3657752..3659008 (-) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| ACLINY_RS18825 (ACLINY_18825) | dxr | 3659025..3660167 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| ACLINY_RS18830 (ACLINY_18830) | cdsA | 3660191..3660982 (-) | 792 | WP_000813583.1 | phosphatidate cytidylyltransferase | - |
| ACLINY_RS18835 (ACLINY_18835) | uppS | 3661000..3661776 (-) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| ACLINY_RS18840 (ACLINY_18840) | frr | 3661862..3662419 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| ACLINY_RS18845 (ACLINY_18845) | pyrH | 3662422..3663144 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| ACLINY_RS18850 (ACLINY_18850) | tsf | 3663211..3664098 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| ACLINY_RS18855 (ACLINY_18855) | rpsB | 3664202..3664903 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| ACLINY_RS18860 (ACLINY_18860) | codY | 3665254..3666033 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| ACLINY_RS18865 (ACLINY_18865) | hslU | 3666111..3667502 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| ACLINY_RS18870 (ACLINY_18870) | hslV | 3667525..3668067 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| ACLINY_RS18875 (ACLINY_18875) | xerC | 3668110..3669009 (-) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| ACLINY_RS18880 (ACLINY_18880) | trmFO | 3669075..3670379 (-) | 1305 | WP_001991958.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACLINY_RS18885 (ACLINY_18885) | topA | 3670430..3672508 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| ACLINY_RS18890 (ACLINY_18890) | dprA | 3672653..3673522 (-) | 870 | WP_000818033.1 | DNA-processing protein DprA | - |
| ACLINY_RS18895 (ACLINY_18895) | sucD | 3673610..3674512 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| ACLINY_RS18900 (ACLINY_18900) | sucC | 3674532..3675692 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACLINY_RS18905 (ACLINY_18905) | rnhB | 3675886..3676659 (-) | 774 | WP_411500932.1 | ribonuclease HII | - |
| ACLINY_RS18910 (ACLINY_18910) | ylqF | 3676711..3677601 (-) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| ACLINY_RS18915 (ACLINY_18915) | lepB | 3677622..3678173 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| ACLINY_RS18920 (ACLINY_18920) | rplS | 3678275..3678619 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| ACLINY_RS18925 (ACLINY_18925) | trmD | 3678766..3679500 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACLINY_RS18930 (ACLINY_18930) | rimM | 3679500..3680015 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| ACLINY_RS18935 (ACLINY_18935) | - | 3680136..3680363 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| ACLINY_RS18940 (ACLINY_18940) | rpsP | 3680378..3680650 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| ACLINY_RS18945 (ACLINY_18945) | ffh | 3680751..3682100 (-) | 1350 | WP_000863458.1 | signal recognition particle protein | - |
| ACLINY_RS18950 (ACLINY_18950) | - | 3682113..3682445 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| ACLINY_RS18955 (ACLINY_18955) | ftsY | 3682579..3683568 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| ACLINY_RS18960 (ACLINY_18960) | smc | 3683584..3687153 (-) | 3570 | WP_000478986.1 | chromosome segregation protein SMC | - |
| ACLINY_RS18965 (ACLINY_18965) | rncS | 3687300..3688037 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| ACLINY_RS18970 (ACLINY_18970) | acpP | 3688096..3688329 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| ACLINY_RS18975 (ACLINY_18975) | fabG | 3688399..3689139 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ACLINY_RS18980 (ACLINY_18980) | fabD | 3689139..3690083 (-) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| ACLINY_RS18985 (ACLINY_18985) | plsX | 3690098..3691090 (-) | 993 | WP_411500933.1 | phosphate acyltransferase PlsX | - |
| ACLINY_RS18990 (ACLINY_18990) | fapR | 3691087..3691680 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| ACLINY_RS18995 (ACLINY_18995) | recG | 3691769..3693817 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| ACLINY_RS19000 (ACLINY_19000) | - | 3694107..3695783 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| ACLINY_RS19005 (ACLINY_19005) | - | 3695806..3696168 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| ACLINY_RS19010 (ACLINY_19010) | rpmB | 3696547..3696735 (+) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| ACLINY_RS19015 (ACLINY_19015) | spoVM | 3696809..3696889 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| ACLINY_RS19020 (ACLINY_19020) | - | 3696956..3697636 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| ACLINY_RS19025 (ACLINY_19025) | rpe | 3697736..3698380 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| ACLINY_RS19030 (ACLINY_19030) | rsgA | 3698383..3699264 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| ACLINY_RS19035 (ACLINY_19035) | prkC | 3699533..3701506 (-) | 1974 | WP_000904757.1 | serine/threonine protein kinase PrkC | - |
| ACLINY_RS19040 (ACLINY_19040) | - | 3701515..3702267 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| ACLINY_RS19045 (ACLINY_19045) | rlmN | 3702272..3703360 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| ACLINY_RS19050 (ACLINY_19050) | rsmB | 3703365..3704699 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=1083409 ACLINY_RS18860 WP_000421288.1 3665254..3666033(-) (codY) [Bacillus thuringiensis strain MPB19]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=1083409 ACLINY_RS18860 WP_000421288.1 3665254..3666033(-) (codY) [Bacillus thuringiensis strain MPB19]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |