Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | ACLINZ_RS18830 | Genome accession | NZ_CP176860 |
| Coordinates | 3665080..3665859 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus thuringiensis strain MPB18 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3630758..3704683 | 3665080..3665859 | within | 0 |
Gene organization within MGE regions
Location: 3630758..3704683
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLINZ_RS18680 (ACLINZ_18680) | - | 3631101..3632771 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| ACLINZ_RS18685 (ACLINZ_18685) | dapA | 3633537..3634415 (-) | 879 | WP_263696149.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| ACLINZ_RS18690 (ACLINZ_18690) | dapG | 3634427..3635659 (-) | 1233 | WP_000692470.1 | aspartate kinase | - |
| ACLINZ_RS18695 (ACLINZ_18695) | asd | 3635683..3636729 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| ACLINZ_RS18700 (ACLINZ_18700) | dpaB | 3636880..3637479 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| ACLINZ_RS18705 (ACLINZ_18705) | dpaA | 3637476..3638378 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| ACLINZ_RS18710 (ACLINZ_18710) | - | 3638653..3638904 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| ACLINZ_RS18715 (ACLINZ_18715) | - | 3639031..3640272 (-) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| ACLINZ_RS18720 (ACLINZ_18720) | - | 3640359..3641258 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| ACLINZ_RS18725 (ACLINZ_18725) | pnp | 3641410..3643548 (-) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| ACLINZ_RS18730 (ACLINZ_18730) | rpsO | 3643709..3643978 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| ACLINZ_RS18735 (ACLINZ_18735) | ribF | 3644079..3645050 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ACLINZ_RS18740 (ACLINZ_18740) | truB | 3645094..3646017 (-) | 924 | WP_000399337.1 | tRNA pseudouridine(55) synthase TruB | - |
| ACLINZ_RS18745 (ACLINZ_18745) | rbfA | 3646104..3646460 (-) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| ACLINZ_RS18750 (ACLINZ_18750) | - | 3646476..3646757 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| ACLINZ_RS18755 (ACLINZ_18755) | infB | 3646754..3648814 (-) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| ACLINZ_RS18760 (ACLINZ_18760) | - | 3648819..3649130 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| ACLINZ_RS18765 (ACLINZ_18765) | rnpM | 3649131..3649403 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| ACLINZ_RS18770 (ACLINZ_18770) | nusA | 3649415..3650521 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| ACLINZ_RS18775 (ACLINZ_18775) | rimP | 3650539..3651009 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| ACLINZ_RS18780 (ACLINZ_18780) | - | 3651342..3655643 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| ACLINZ_RS18785 (ACLINZ_18785) | - | 3655768..3657468 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| ACLINZ_RS18790 (ACLINZ_18790) | rseP | 3657578..3658834 (-) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| ACLINZ_RS18795 (ACLINZ_18795) | dxr | 3658851..3659993 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| ACLINZ_RS18800 (ACLINZ_18800) | cdsA | 3660017..3660808 (-) | 792 | WP_000813583.1 | phosphatidate cytidylyltransferase | - |
| ACLINZ_RS18805 (ACLINZ_18805) | uppS | 3660826..3661602 (-) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| ACLINZ_RS18810 (ACLINZ_18810) | frr | 3661688..3662245 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| ACLINZ_RS18815 (ACLINZ_18815) | pyrH | 3662248..3662970 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| ACLINZ_RS18820 (ACLINZ_18820) | tsf | 3663037..3663924 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| ACLINZ_RS18825 (ACLINZ_18825) | rpsB | 3664028..3664729 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| ACLINZ_RS18830 (ACLINZ_18830) | codY | 3665080..3665859 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| ACLINZ_RS18835 (ACLINZ_18835) | hslU | 3665937..3667328 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| ACLINZ_RS18840 (ACLINZ_18840) | hslV | 3667351..3667893 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| ACLINZ_RS18845 (ACLINZ_18845) | xerC | 3667936..3668835 (-) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| ACLINZ_RS18850 (ACLINZ_18850) | trmFO | 3668901..3670205 (-) | 1305 | WP_001991958.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACLINZ_RS18855 (ACLINZ_18855) | topA | 3670256..3672334 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| ACLINZ_RS18860 (ACLINZ_18860) | dprA | 3672479..3673348 (-) | 870 | WP_000818033.1 | DNA-processing protein DprA | - |
| ACLINZ_RS18865 (ACLINZ_18865) | sucD | 3673436..3674338 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| ACLINZ_RS18870 (ACLINZ_18870) | sucC | 3674358..3675518 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACLINZ_RS18875 (ACLINZ_18875) | rnhB | 3675712..3676485 (-) | 774 | WP_411500932.1 | ribonuclease HII | - |
| ACLINZ_RS18880 (ACLINZ_18880) | ylqF | 3676537..3677427 (-) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| ACLINZ_RS18885 (ACLINZ_18885) | lepB | 3677448..3677999 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| ACLINZ_RS18890 (ACLINZ_18890) | rplS | 3678101..3678445 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| ACLINZ_RS18895 (ACLINZ_18895) | trmD | 3678592..3679326 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACLINZ_RS18900 (ACLINZ_18900) | rimM | 3679326..3679841 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| ACLINZ_RS18905 (ACLINZ_18905) | - | 3679962..3680189 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| ACLINZ_RS18910 (ACLINZ_18910) | rpsP | 3680204..3680476 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| ACLINZ_RS18915 (ACLINZ_18915) | ffh | 3680577..3681926 (-) | 1350 | WP_000863458.1 | signal recognition particle protein | - |
| ACLINZ_RS18920 (ACLINZ_18920) | - | 3681939..3682271 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| ACLINZ_RS18925 (ACLINZ_18925) | ftsY | 3682405..3683394 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| ACLINZ_RS18930 (ACLINZ_18930) | smc | 3683410..3686979 (-) | 3570 | WP_000478986.1 | chromosome segregation protein SMC | - |
| ACLINZ_RS18935 (ACLINZ_18935) | rncS | 3687126..3687863 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| ACLINZ_RS18940 (ACLINZ_18940) | acpP | 3687922..3688155 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| ACLINZ_RS18945 (ACLINZ_18945) | fabG | 3688225..3688965 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ACLINZ_RS18950 (ACLINZ_18950) | fabD | 3688965..3689909 (-) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| ACLINZ_RS18955 (ACLINZ_18955) | plsX | 3689924..3690916 (-) | 993 | WP_411500933.1 | phosphate acyltransferase PlsX | - |
| ACLINZ_RS18960 (ACLINZ_18960) | fapR | 3690913..3691506 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| ACLINZ_RS18965 (ACLINZ_18965) | recG | 3691595..3693643 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| ACLINZ_RS18970 (ACLINZ_18970) | - | 3693933..3695609 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| ACLINZ_RS18975 (ACLINZ_18975) | - | 3695632..3695994 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| ACLINZ_RS18980 (ACLINZ_18980) | rpmB | 3696373..3696561 (+) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| ACLINZ_RS18985 (ACLINZ_18985) | spoVM | 3696635..3696715 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| ACLINZ_RS18990 (ACLINZ_18990) | - | 3696782..3697462 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| ACLINZ_RS18995 (ACLINZ_18995) | rpe | 3697562..3698206 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| ACLINZ_RS19000 (ACLINZ_19000) | rsgA | 3698209..3699090 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| ACLINZ_RS19005 (ACLINZ_19005) | prkC | 3699359..3701332 (-) | 1974 | WP_000904757.1 | serine/threonine protein kinase PrkC | - |
| ACLINZ_RS19010 (ACLINZ_19010) | - | 3701341..3702093 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| ACLINZ_RS19015 (ACLINZ_19015) | rlmN | 3702098..3703186 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| ACLINZ_RS19020 (ACLINZ_19020) | rsmB | 3703191..3704525 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=1083362 ACLINZ_RS18830 WP_000421288.1 3665080..3665859(-) (codY) [Bacillus thuringiensis strain MPB18]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=1083362 ACLINZ_RS18830 WP_000421288.1 3665080..3665859(-) (codY) [Bacillus thuringiensis strain MPB18]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |