Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLINZ_RS18830 Genome accession   NZ_CP176860
Coordinates   3665080..3665859 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus thuringiensis strain MPB18     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3660080..3670859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLINZ_RS18805 (ACLINZ_18805) uppS 3660826..3661602 (-) 777 WP_000971301.1 isoprenyl transferase -
  ACLINZ_RS18810 (ACLINZ_18810) frr 3661688..3662245 (-) 558 WP_000531503.1 ribosome recycling factor -
  ACLINZ_RS18815 (ACLINZ_18815) pyrH 3662248..3662970 (-) 723 WP_000042663.1 UMP kinase -
  ACLINZ_RS18820 (ACLINZ_18820) tsf 3663037..3663924 (-) 888 WP_001018581.1 translation elongation factor Ts -
  ACLINZ_RS18825 (ACLINZ_18825) rpsB 3664028..3664729 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  ACLINZ_RS18830 (ACLINZ_18830) codY 3665080..3665859 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLINZ_RS18835 (ACLINZ_18835) hslU 3665937..3667328 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  ACLINZ_RS18840 (ACLINZ_18840) hslV 3667351..3667893 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  ACLINZ_RS18845 (ACLINZ_18845) xerC 3667936..3668835 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  ACLINZ_RS18850 (ACLINZ_18850) trmFO 3668901..3670205 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=1083362 ACLINZ_RS18830 WP_000421288.1 3665080..3665859(-) (codY) [Bacillus thuringiensis strain MPB18]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1083362 ACLINZ_RS18830 WP_000421288.1 3665080..3665859(-) (codY) [Bacillus thuringiensis strain MPB18]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment