Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AACH71_RS20245 Genome accession   NZ_AP029050
Coordinates   3990036..3992432 (+) Length   798 a.a.
NCBI ID   WP_040082303.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3985036..3997432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS20220 (BSB_38830) - 3985117..3986382 (-) 1266 WP_014664802.1 replication-associated recombination protein A -
  AACH71_RS20225 (BSB_38840) cymR 3986585..3987001 (+) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  AACH71_RS20230 (BSB_38850) - 3987020..3988162 (+) 1143 WP_014664801.1 cysteine desulfurase family protein -
  AACH71_RS20235 (BSB_38860) mnmA 3988190..3989305 (+) 1116 WP_134975268.1 tRNA 2-thiouridine(34) synthase MnmA -
  AACH71_RS20240 (BSB_38870) - 3989391..3990011 (+) 621 WP_206696623.1 tetratricopeptide repeat protein -
  AACH71_RS20245 (BSB_38880) recD2 3990036..3992432 (+) 2397 WP_040082303.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AACH71_RS20250 (BSB_38890) - 3992489..3993013 (+) 525 WP_136654280.1 hypothetical protein -
  AACH71_RS20255 (BSB_38900) - 3993025..3993216 (+) 192 WP_003225893.1 hypothetical protein -
  AACH71_RS20260 (BSB_38910) - 3993238..3993369 (+) 132 WP_014664797.1 DUF3918 family protein -
  AACH71_RS20265 (BSB_38920) - 3993787..3994848 (+) 1062 WP_040082305.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89141.69 Da        Isoelectric Point: 4.9548

>NTDB_id=108305 AACH71_RS20245 WP_040082303.1 3990036..3992432(+) (recD2) [Bacillus stercoris strain BST19]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAKEDQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFSHTEDEPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=108305 AACH71_RS20245 WP_040082303.1 3990036..3992432(+) (recD2) [Bacillus stercoris strain BST19]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTTAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATAGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACACACCCGAAATTCGGGCTC
CAATTTCAAGCGGAGCATTTCAAAAAAGAGATACCGACGACTAAGGAAGGCATTATACAATATTTATCGAGTGATTTATT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAACAAAATATTGGCAGACG
CTTCAGTGCTTTATGATGTTCCGAGGCTGTCAAAAAAGAAAGCAGACACGCTGGCCGGTGCCTTGCAGCGGCATCAGGGG
CTCGAGCAAATCATGATTTCCCTGAACCAGTTTGGCTTTGGGCCGCAGCTGTCTATGAAAATTTATCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAAGAAAATCCTTATCAGCTTGTGAAGGACGTAGAAGGCATCGGGTTTGGAAAAGCGGATG
AGTTGGGCGGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAAAAGCTGCGATTCTGTACACGCTTGAAACGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAGCAGCTGATCATCGATACCCAATCACTGTTAAACCAGTCAGCAAA
GGAAGATCAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCTCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGACGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCTAAGCGAGTGAAACATATCGCAAGCCAAACT
GAATATGATGACCAGTTTCCCGAATCAGAATTTCTGCTCGCTTTGGGGGAATTGGAAGAACGGATGAACGTTCAGTATGC
CCCCAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGGAAAA
CGACGGTTATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGAATGAGTGAATCAACGGGACTTCCTGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTTCCCATACAGAGGATGAGCCGATTGAAGGGAAGCTGT
TAATAATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCATCTATTCAAGGCGATCCCTGATCATATCCAAATC
ATCATTGTCGGAGACGAAGACCAGTTGCCTTCTGTAGGTCCGGGCCAAGTGCTGAGAGACCTACTGGCATCCCAGGTGAT
TCCCACGGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCCACAAAGGACCGATCCTTTATTCGCTGCGGAGGCTCGCAAATTAAAGAAGTT
GTTGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCCGGCATCAATGAGTTGAACGTGATGCTGCAGGATATTTTAAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATTACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGATGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCAATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGATGCAACTGTCAG
ACAGACATCCTTAAAAAACAGGCTGTCCGTACAGGTTGAGGAAATGGATGCCGAGCTTGAGGCTCTCCAAAAAGAGCTCC
CATTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTTGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.996

99.875

0.989

Multiple sequence alignment