Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AACH71_RS20170 Genome accession   NZ_AP029050
Coordinates   3972940..3975300 (+) Length   786 a.a.
NCBI ID   WP_069149974.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3967940..3980300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS20150 (BSB_38700) comN 3969269..3969565 (+) 297 WP_014664815.1 post-transcriptional regulator ComN -
  AACH71_RS20155 (BSB_38710) secDF 3969604..3971817 (+) 2214 WP_136654286.1 protein translocase subunit SecDF -
  AACH71_RS20160 (BSB_38720) - 3971978..3972475 (+) 498 WP_069149975.1 cation:proton antiporter regulatory subunit -
  AACH71_RS20165 (BSB_38730) - 3972550..3972873 (+) 324 WP_136654285.1 lipopolysaccharide assembly LapA domain-containing protein -
  AACH71_RS20170 (BSB_38740) recJ 3972940..3975300 (+) 2361 WP_069149974.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AACH71_RS20175 (BSB_38750) - 3975306..3975818 (+) 513 WP_136654284.1 adenine phosphoribosyltransferase -
  AACH71_RS20180 (BSB_38760) relA 3975987..3978191 (+) 2205 WP_003229747.1 GTP diphosphokinase -
  AACH71_RS20185 (BSB_38770) dtd 3978204..3978644 (+) 441 WP_071581519.1 D-aminoacyl-tRNA deacylase -
  AACH71_RS20190 (BSB_38780) - 3978671..3980227 (-) 1557 WP_136654283.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87955.52 Da        Isoelectric Point: 5.0461

>NTDB_id=108304 AACH71_RS20170 WP_069149974.1 3972940..3975300(+) (recJ) [Bacillus stercoris strain BST19]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDSFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVERQGLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLKAEDVPNLRSRLNEIADNTLTEEDFVPVQEVDLVCSVEDITVESITEMNMLSPFGMLN
PKPHVLVENAVLEDVRKIGANKTHVKMTIKNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTLLQTEGLRQEVQVISSEDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGAKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=108304 AACH71_RS20170 WP_069149974.1 3972940..3975300(+) (recJ) [Bacillus stercoris strain BST19]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCTAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCTTTTGAAATGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACCAGTACGTCAGTGATGCTTCACACGCTGCAAAAACT
ATCGGCTCAAGTTGATTTTTATATACCTGACCGTTTTAAAGAAGGCTATGGACCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGGGGCTTCTCTTTGATCATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGGTGGCGAAAGAACTC
GGGCTGGATGTCATCATTACAGATCATCATGAACCGGGACCGGAGCTTCCGGATGTCCATGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACTTACCCGTTTAAAGAGCTTGCAGGGGTCGGAGTCGCGTTTAAGCTAGCCCATGCTTTATTGGGTGAAC
TTCCGGATGAACTGCTTGACCTGGCGGCAATCGGCACCATTGCTGATCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGACGGACAAATCGGCTCGGCTTAAAAGAGCTGATTAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGATTTCAGCTCGCACCAAGGCTGAATGCCGTCGGAAGAATCGAACAGGCGGATC
CCGCTGTTCATTTGCTTATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCAGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAAATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACGGCAAGGGCTCGATCAAACTGCAATTGT
CGTGGCAAAAGCCGGATGGAACCCGGGAGTCGTCGGGATTGTGGCCTCAAAGCTTGTGGACCGTTTCTATCGCCCTGCTA
TTGTGCTTGGCATTGATGAAGAAAAGGGGATCGCTAAAGGTTCGGCCCGAAGCATCAGGGGATTTAATTTATTTGAGAGC
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCAGCGGGGATGACGCTCAAAGCCGAGGATGT
GCCGAATTTGCGAAGCAGGCTGAATGAAATAGCGGACAATACGCTTACGGAAGAGGATTTTGTTCCTGTACAGGAAGTCG
ACCTTGTCTGCAGCGTCGAGGACATTACAGTTGAAAGCATCACAGAAATGAACATGCTTTCTCCTTTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCAGTACTGGAAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAAT
GACGATCAAAAATGAGTCGTCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTCGAAGAAGGCATCGTACCGGGAT
CAAGAATTTCCATTGTCGGTGAGATGTCAATCAACGAATGGAACAATCGGAAAAAACCGCAGCTTATGATAAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGACGTGGGAAGATACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAAACTGAAGGCCTTCGTCAAGAAGTGCAGGTCATCA
GCTCAGAAGATCAAGCAAAGGCGTTTGACCTCGATGGTGCATATATTGTATTGCTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACGTTTGCTGGAAGGAAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCGAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGATGTGAAAAAACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGTCTGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTTGTGAGCGGAGCAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGCGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

98.346

100

0.983

Multiple sequence alignment