Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACK3B6_RS14175 Genome accession   NZ_CP176792
Coordinates   2760706..2763066 (-) Length   786 a.a.
NCBI ID   WP_059293507.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2755706..2768066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS14155 (ACK3B6_14155) - 2755785..2757338 (+) 1554 WP_105990302.1 SH3 domain-containing protein -
  ACK3B6_RS14160 (ACK3B6_14160) dtd 2757363..2757803 (-) 441 WP_059293508.1 D-aminoacyl-tRNA deacylase -
  ACK3B6_RS14165 (ACK3B6_14165) relA 2757816..2760020 (-) 2205 WP_044154273.1 GTP diphosphokinase -
  ACK3B6_RS14170 (ACK3B6_14170) - 2760188..2760700 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  ACK3B6_RS14175 (ACK3B6_14175) recJ 2760706..2763066 (-) 2361 WP_059293507.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACK3B6_RS14180 (ACK3B6_14180) - 2763133..2763468 (-) 336 WP_168748348.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACK3B6_RS14185 (ACK3B6_14185) - 2763544..2764041 (-) 498 WP_024122319.1 cation:proton antiporter regulatory subunit -
  ACK3B6_RS14190 (ACK3B6_14190) secDF 2764201..2766414 (-) 2214 WP_416042773.1 protein translocase subunit SecDF -
  ACK3B6_RS14195 (ACK3B6_14195) - 2766452..2766748 (-) 297 WP_010335127.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88276.85 Da        Isoelectric Point: 4.9486

>NTDB_id=1083015 ACK3B6_RS14175 WP_059293507.1 2760706..2763066(-) (recJ) [Bacillus halotolerans strain BCP32]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAENARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGEIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADNTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEESIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETTTLLQSEDLRHDVHVISSEDQAKAYELDGAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGAFDLKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1083015 ACK3B6_RS14175 WP_059293507.1 2760706..2763066(-) (recJ) [Bacillus halotolerans strain BCP32]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGAGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAACGCGAGGCTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTTGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCGGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCTAATGAACAGGCATTTCGCTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAAGAGCTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCGGAGCTTCCGGATGTCCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTACCCTTTTAAGGAGCTTGCAGGAGTGGGCGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
TGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGTTTAAAAGAACTGATTAAGCTCTCAGGCGGAGAAAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATTTGCTTATGTCCGAGGACCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAACCAAACTGCGATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTTCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAAGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACAATACGCTTACAGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGATATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAC
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCATCCCAGCTTGACTGCGTCGGTTTTAACAAAGGCGAGCTTGAGGAAAGTATAGTGCCCGGTT
CAAAAATTTCGATTGTTGGTGAAATGTCGATCAATGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGTACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCACAACGCTTCTTCAGTCTGAAGATCTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATATGAACTTGACGGTGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCGCTTTTGACTTGAAAAAACACGGTT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCACAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

94.275

100

0.943

Multiple sequence alignment