Detailed information NTG1082993

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACK3B6_RS08870
• Genome accession: NZ_CP176792
• Coordinates: 1733536..1734315 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus halotolerans strain BCP32
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1728536..1739315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK3B6_RS08850 (ACK3B6_08850)	trmFO	1729230..1730537 (+)	1308	WP_024121391.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACK3B6_RS08855 (ACK3B6_08855)	xerC	1730605..1731519 (+)	915	WP_044155903.1	tyrosine recombinase XerC	-
ACK3B6_RS08860 (ACK3B6_08860)	clpQ	1731532..1732077 (+)	546	WP_014663962.1	ATP-dependent protease subunit ClpQ	-
ACK3B6_RS08865 (ACK3B6_08865)	hslU	1732094..1733497 (+)	1404	WP_044155901.1	HslU--HslV peptidase ATPase subunit	-
ACK3B6_RS08870 (ACK3B6_08870)	codY	1733536..1734315 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACK3B6_RS08875 (ACK3B6_08875)	flgB	1734696..1735085 (+)	390	WP_010334244.1	flagellar basal body rod protein FlgB	-
ACK3B6_RS08880 (ACK3B6_08880)	flgC	1735085..1735537 (+)	453	WP_105991201.1	flagellar basal body rod protein FlgC	-
ACK3B6_RS08885 (ACK3B6_08885)	fliE	1735548..1735868 (+)	321	WP_024121395.1	flagellar hook-basal body complex protein FliE	-
ACK3B6_RS08890 (ACK3B6_08890)	fliF	1735914..1737524 (+)	1611	WP_059335795.1	flagellar basal-body MS-ring/collar protein FliF	-
ACK3B6_RS08895 (ACK3B6_08895)	fliG	1737537..1738553 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
ACK3B6_RS08900 (ACK3B6_08900)	fliH	1738546..1739298 (+)	753	WP_202853058.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1082993 ACK3B6_RS08870 WP_003220850.1 1733536..1734315(+) (codY) [Bacillus halotolerans strain BCP32]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1082993 ACK3B6_RS08870 WP_003220850.1 1733536..1734315(+) (codY) [Bacillus halotolerans strain BCP32]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCTAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTAGGCATTACCC
GCTCAGTTATTGTTAATGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCACATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467