Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACK3B6_RS08840 Genome accession   NZ_CP176792
Coordinates   1725989..1726888 (+) Length   299 a.a.
NCBI ID   WP_105954228.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1720989..1731888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS08820 (ACK3B6_08820) - 1721658..1723388 (+) 1731 WP_202852534.1 hypothetical protein -
  ACK3B6_RS08825 (ACK3B6_08825) - 1723385..1723666 (+) 282 WP_059292791.1 FlhB-like flagellar biosynthesis protein -
  ACK3B6_RS08830 (ACK3B6_08830) sucC 1723840..1724997 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  ACK3B6_RS08835 (ACK3B6_08835) sucD 1725026..1725928 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  ACK3B6_RS08840 (ACK3B6_08840) dprA 1725989..1726888 (+) 900 WP_105954228.1 DNA-processing protein DprA Machinery gene
  ACK3B6_RS08845 (ACK3B6_08845) topA 1727079..1729154 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  ACK3B6_RS08850 (ACK3B6_08850) trmFO 1729230..1730537 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACK3B6_RS08855 (ACK3B6_08855) xerC 1730605..1731519 (+) 915 WP_044155903.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33003.28 Da        Isoelectric Point: 9.5448

>NTDB_id=1082992 ACK3B6_RS08840 WP_105954228.1 1725989..1726888(+) (dprA) [Bacillus halotolerans strain BCP32]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLSNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYQQQGIKVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1082992 ACK3B6_RS08840 WP_105954228.1 1725989..1726888(+) (dprA) [Bacillus halotolerans strain BCP32]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGTCAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTCCAGCATTTACTCTCTGTATATCAACAGCAAGGCATTAAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATCCGGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.278

100

0.833

Multiple sequence alignment