Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AACH71_RS18005 Genome accession   NZ_AP029050
Coordinates   3554813..3555457 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549813..3560457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS17975 (BSB_34630) - 3550199..3550567 (-) 369 WP_014665193.1 hypothetical protein -
  AACH71_RS17980 - 3550682..3550807 (-) 126 WP_128422565.1 hypothetical protein -
  AACH71_RS17985 (BSB_34640) degQ 3551029..3551169 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AACH71_RS17990 (BSB_34650) comQ 3551354..3552253 (+) 900 WP_103750156.1 ComX modifying isoprenyl transferase ComQ Regulator
  AACH71_RS17995 (BSB_34660) comX 3552241..3552408 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  AACH71_RS18000 comP 3552423..3554732 (+) 2310 Protein_3505 two-component system sensor histidine kinase ComP -
  AACH71_RS18005 (BSB_34700) comA 3554813..3555457 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AACH71_RS18010 (BSB_34710) - 3555475..3555855 (+) 381 WP_040081970.1 hotdog fold thioesterase -
  AACH71_RS18015 (BSB_34720) mnhG 3555894..3556268 (-) 375 WP_014665188.1 monovalent cation/H(+) antiporter subunit G -
  AACH71_RS18020 (BSB_34730) - 3556252..3556536 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AACH71_RS18025 (BSB_34740) - 3556536..3557012 (-) 477 WP_014665187.1 Na+/H+ antiporter subunit E -
  AACH71_RS18030 (BSB_34750) - 3557018..3558499 (-) 1482 WP_136653690.1 Na+/H+ antiporter subunit D -
  AACH71_RS18035 (BSB_34760) - 3558492..3558833 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AACH71_RS18040 (BSB_34770) - 3558833..3559264 (-) 432 WP_136653689.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=108297 AACH71_RS18005 WP_003220716.1 3554813..3555457(+) (comA) [Bacillus stercoris strain BST19]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=108297 AACH71_RS18005 WP_003220716.1 3554813..3555457(+) (comA) [Bacillus stercoris strain BST19]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCACTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment