Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACK1LH_RS14995 Genome accession   NZ_CP176757
Coordinates   2911530..2913872 (-) Length   780 a.a.
NCBI ID   WP_411333496.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2906530..2918872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS14980 (ACK1LH_14980) dtd 2908184..2908627 (-) 444 WP_411333495.1 D-aminoacyl-tRNA deacylase -
  ACK1LH_RS14985 (ACK1LH_14985) - 2908644..2910836 (-) 2193 WP_029279436.1 RelA/SpoT family protein -
  ACK1LH_RS14990 (ACK1LH_14990) - 2911001..2911513 (-) 513 WP_029279434.1 adenine phosphoribosyltransferase -
  ACK1LH_RS14995 (ACK1LH_14995) recJ 2911530..2913872 (-) 2343 WP_411333496.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACK1LH_RS15000 (ACK1LH_15000) - 2914364..2914708 (-) 345 WP_203288241.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACK1LH_RS15005 (ACK1LH_15005) - 2914898..2915332 (-) 435 WP_029279428.1 cell wall hydrolase -
  ACK1LH_RS15010 (ACK1LH_15010) secDF 2915445..2917700 (-) 2256 WP_029566766.1 protein translocase subunit SecDF -
  ACK1LH_RS15015 (ACK1LH_15015) - 2917738..2918034 (-) 297 WP_029279425.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 86825.89 Da        Isoelectric Point: 5.4855

>NTDB_id=1082793 ACK1LH_RS14995 WP_411333496.1 2911530..2913872(-) (recJ) [Metabacillus indicus strain JKLC.Or24]
MLKAKNRWDVHEHHPEKMNELMSTLNLTPLVASLLLNRGIESADAADQFLHIEKHGFHDPFTLLGMDKAVQRIHSAIEHG
EKILIFGDYDADGVSSTVVMLETLHSLGANADFYIPNRFTEGYGPNEPAFRKARENGYGLIITVDTGISAVNEAALAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCTYAFKELAGVGVAFKLAHALSGTVPEHLLEIAAIGTIADLVPLHDENRLI
ARLGIQQMNRTERTGLKALLKAAGADGKEVNEETIGFAVGPRINAVGRLETADPAVRLLMSADSEEAAELAVYIDGLNKE
RQKIVSQITDEAIEQVETLYPADQHSVLVLAKEGWNPGVVGIVASRIVEKYYRPTIILCIDPEKGTAKGSARSIAGFDLF
ANLSECRDILPHFGGHPMAAGMTLELQHVDQLRDRLNNLASATLKEEDFIPIKTIDAACSLADVSVESIEKIAKLAPFGM
GNPKPLFLLESVQVGSMRKIGSDQTHLKLAVEQDQKQLDCIGFGFGHLHDHMAPLAKVSLVGELSINEWNNFRKPQLMIQ
DLAVNEWQLFDARGSRDLNKTLDKMKDKENVYVVFQKETLSMLKDSGQDIVYLEDEGSAEKIQGKYITFVDTPTSIERLD
ALFENVFPERIYAVFHQHTDHFFATIPTRDHFKWYYGFLKQKETFDLKKHAEALARHKGWSSETINFMSQVFFDLEFATI
DNGIISVNHQPPKRDLSESSSYSAKLSQLELENTLLYSSYQDLKKWFDDRMKQSKALVNA

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=1082793 ACK1LH_RS14995 WP_411333496.1 2911530..2913872(-) (recJ) [Metabacillus indicus strain JKLC.Or24]
TTGCTGAAAGCAAAGAACAGATGGGATGTTCACGAACACCATCCCGAAAAAATGAACGAATTGATGAGTACATTGAATCT
TACGCCTCTGGTAGCTTCACTTTTGCTTAACCGGGGCATTGAATCGGCTGATGCGGCCGATCAGTTTCTTCACATAGAAA
AGCACGGCTTTCACGATCCATTTACACTGCTCGGCATGGATAAAGCTGTGCAGCGTATTCACAGCGCCATTGAGCATGGG
GAAAAAATTCTGATTTTCGGAGATTATGACGCGGACGGCGTAAGCTCGACGGTCGTCATGCTTGAGACGCTTCATTCACT
TGGAGCCAATGCCGATTTTTATATTCCGAACCGGTTCACCGAGGGCTACGGTCCGAATGAACCTGCTTTCCGCAAAGCCC
GTGAAAATGGCTACGGGCTGATTATTACGGTTGATACAGGAATTTCTGCTGTTAACGAAGCGGCTCTTGCAAAAGAGCTT
GGAGTCGATCTGATTATTACCGATCATCACGAACCAGGGCCGGTACTTCCGGATGCGTATGCCATCATCCATCCGAAGCA
GCCTGGCTGCACGTATGCATTTAAGGAGCTTGCTGGTGTAGGGGTTGCTTTTAAGCTTGCCCATGCGCTTTCAGGAACTG
TTCCGGAACACCTGCTTGAGATAGCAGCCATCGGTACAATTGCCGACCTTGTGCCCCTTCACGATGAAAACCGTCTTATT
GCAAGATTGGGTATCCAGCAGATGAACCGGACAGAACGGACAGGATTAAAGGCACTTCTAAAAGCAGCAGGGGCTGACGG
GAAAGAAGTCAATGAGGAGACCATCGGTTTTGCGGTCGGACCCCGCATCAATGCAGTCGGACGCCTTGAAACAGCAGATC
CCGCTGTCCGCCTCCTGATGTCTGCGGACAGTGAGGAAGCGGCAGAGCTTGCCGTTTACATCGACGGCTTAAACAAAGAG
AGACAGAAAATTGTTTCGCAGATTACAGACGAAGCGATCGAACAGGTTGAGACCCTGTACCCAGCAGATCAGCATTCTGT
GCTTGTTCTTGCGAAAGAGGGCTGGAATCCGGGTGTCGTAGGAATTGTAGCGTCAAGGATAGTGGAAAAATACTACAGAC
CGACCATTATTCTGTGCATTGATCCTGAAAAAGGAACGGCAAAAGGTTCTGCCCGAAGCATCGCAGGGTTTGATCTGTTT
GCCAATCTTTCAGAATGCCGTGATATTCTACCGCACTTTGGCGGTCACCCAATGGCAGCAGGCATGACGCTTGAGCTCCA
GCATGTCGATCAGCTGAGAGACAGATTGAATAATCTTGCCTCCGCTACGCTGAAAGAAGAGGATTTTATTCCGATAAAAA
CCATTGATGCCGCATGCAGTCTTGCTGACGTTTCTGTGGAGTCGATTGAGAAAATAGCGAAGCTCGCCCCGTTTGGCATG
GGAAATCCAAAACCGCTGTTTTTGCTGGAGTCTGTACAAGTGGGGTCCATGAGAAAAATCGGTTCTGACCAGACCCACTT
AAAGCTTGCGGTGGAGCAGGATCAAAAGCAGCTTGACTGCATCGGGTTCGGTTTCGGGCATTTGCATGATCACATGGCGC
CGCTCGCGAAAGTGTCACTTGTCGGGGAATTGTCCATAAATGAATGGAACAATTTCAGAAAACCGCAGCTGATGATTCAG
GATCTTGCTGTAAATGAGTGGCAGCTGTTTGATGCAAGAGGATCGCGTGACTTGAATAAAACGCTTGATAAGATGAAGGA
TAAAGAAAACGTTTATGTTGTTTTTCAAAAAGAGACATTGTCTATGCTGAAGGATTCTGGACAGGATATCGTCTATCTCG
AAGATGAGGGTTCGGCTGAAAAAATACAAGGCAAGTACATCACCTTTGTTGATACTCCAACATCTATCGAACGTCTTGAC
GCTCTCTTTGAGAACGTGTTTCCTGAACGCATCTATGCGGTTTTTCATCAGCATACCGATCATTTTTTTGCTACCATCCC
GACAAGAGACCACTTTAAATGGTACTATGGCTTCCTGAAGCAAAAAGAAACTTTTGACTTGAAAAAGCACGCAGAAGCCC
TTGCACGCCACAAAGGATGGTCAAGTGAAACAATCAATTTCATGTCACAGGTGTTTTTTGACTTAGAATTTGCTACAATA
GACAATGGCATTATTTCTGTCAATCATCAGCCGCCTAAAAGAGACCTCTCCGAATCTTCATCGTATTCTGCCAAACTCAG
TCAGCTGGAGCTTGAGAATACGCTGCTGTATTCGTCGTACCAGGACTTGAAGAAGTGGTTTGATGATCGGATGAAACAAT
CGAAGGCGCTTGTCAATGCATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(316-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

57.4

99.615

0.572

Multiple sequence alignment