Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AACH71_RS04155 Genome accession   NZ_AP029050
Coordinates   832187..832966 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus stercoris strain BST19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 827187..837966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS04125 (BSB_08100) fliH 827204..827956 (-) 753 WP_169051593.1 flagellar assembly protein FliH -
  AACH71_RS04130 (BSB_08110) fliG 827949..828965 (-) 1017 WP_014663967.1 flagellar motor switch protein FliG -
  AACH71_RS04135 (BSB_08120) fliF 828978..830588 (-) 1611 WP_040083177.1 flagellar basal-body MS-ring/collar protein FliF -
  AACH71_RS04140 (BSB_08130) fliE 830634..830954 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  AACH71_RS04145 (BSB_08140) flgC 830965..831417 (-) 453 WP_014663965.1 flagellar basal body rod protein FlgC -
  AACH71_RS04150 (BSB_08150) flgB 831417..831806 (-) 390 WP_014663964.1 flagellar basal body rod protein FlgB -
  AACH71_RS04155 (BSB_08160) codY 832187..832966 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AACH71_RS04160 (BSB_08170) hslU 833006..834409 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  AACH71_RS04165 (BSB_08180) clpQ 834426..834971 (-) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  AACH71_RS04170 (BSB_08190) xerC 834984..835898 (-) 915 WP_069149592.1 tyrosine recombinase XerC -
  AACH71_RS04175 (BSB_08200) trmFO 835966..837273 (-) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=108245 AACH71_RS04155 WP_003220850.1 832187..832966(-) (codY) [Bacillus stercoris strain BST19]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=108245 AACH71_RS04155 WP_003220850.1 832187..832966(-) (codY) [Bacillus stercoris strain BST19]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATACACTGCTTTCCCTGTTGAGAACAGAGACTTATTCCA
AGCTGGTTTAACGACAATTGTGCCGATCATCGGAGGAGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTCAATGATGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGTAAAGCTGTTGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCTAGTAAAATCGCTGACCGCGTCGGTATTACCC
GTTCGGTTATTGTGAACGCACTGAGAAAGCTGGAGAGTGCCGGCGTCATTGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGTTAAACAACAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment