Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACK2VN_RS05625 Genome accession   NZ_CP176690
Coordinates   1091279..1093615 (+) Length   778 a.a.
NCBI ID   WP_000528072.1    Uniprot ID   A0A5M9GYL3
Organism   Bacillus paranthracis strain GTVSS-022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086279..1098615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VN_RS05605 (ACK2VN_05605) cymR 1087685..1088101 (+) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  ACK2VN_RS05610 (ACK2VN_05610) - 1088137..1089282 (+) 1146 WP_000439906.1 cysteine desulfurase family protein -
  ACK2VN_RS05615 (ACK2VN_05615) mnmA 1089299..1090414 (+) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACK2VN_RS05620 (ACK2VN_05620) - 1090524..1091183 (+) 660 WP_000066391.1 tetratricopeptide repeat protein -
  ACK2VN_RS05625 (ACK2VN_05625) recD2 1091279..1093615 (+) 2337 WP_000528072.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACK2VN_RS05630 (ACK2VN_05630) - 1093743..1093931 (+) 189 WP_000469281.1 hypothetical protein -
  ACK2VN_RS05635 (ACK2VN_05635) - 1093950..1094078 (+) 129 WP_001053553.1 YrzQ family protein -
  ACK2VN_RS05640 (ACK2VN_05640) - 1094114..1094326 (-) 213 WP_000242543.1 hypothetical protein -
  ACK2VN_RS05645 (ACK2VN_05645) - 1094503..1095570 (+) 1068 WP_000793110.1 AI-2E family transporter -
  ACK2VN_RS05650 (ACK2VN_05650) - 1095610..1095954 (-) 345 WP_000209430.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87403.83 Da        Isoelectric Point: 5.2015

>NTDB_id=1082367 ACK2VN_RS05625 WP_000528072.1 1091279..1093615(+) (recD2) [Bacillus paranthracis strain GTVSS-022]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIVGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=1082367 ACK2VN_RS05625 WP_000528072.1 1091279..1093615(+) (recD2) [Bacillus paranthracis strain GTVSS-022]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGTCATTTTAAAGACCATCCAAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTGGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAATGGTGTTGTCAACAAGCAAAAAGCACAAGAAATTTATGAGACAATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTAATTCGTAATAACCCGTACCAACTTATTGAAGAAGTGGACGGAATTGGTTTTGGAAGAGCGGATGATA
TCGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGACCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCAACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAGGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGGAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAGATTTATCGTCAAGCGGAAGGTTCATCAGTAATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAACCAAAAAGATCGTTCATTTATCGGTTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAGAATGCGAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTAGCCCCGATGTATCGTGGACCGGCGGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTCTTGCAACTTGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGTCGATTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAACGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9GYL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment