Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACK2V4_RS00835 Genome accession   NZ_CP176646
Coordinates   180228..180953 (-) Length   241 a.a.
NCBI ID   WP_062854599.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GTVSS-031     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175228..185953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V4_RS00810 (ACK2V4_00810) - 176347..176838 (+) 492 WP_005458943.1 type II secretion system protein M -
  ACK2V4_RS00815 (ACK2V4_00815) - 176840..177601 (+) 762 WP_062854600.1 type II secretion system protein N -
  ACK2V4_RS00820 (ACK2V4_00820) cysQ 177887..178714 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACK2V4_RS00825 (ACK2V4_00825) nudE 178756..179325 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  ACK2V4_RS00830 (ACK2V4_00830) nfuA 179546..180130 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  ACK2V4_RS00835 (ACK2V4_00835) comF 180228..180953 (-) 726 WP_062854599.1 amidophosphoribosyltransferase Machinery gene
  ACK2V4_RS00840 (ACK2V4_00840) bioH 181038..181805 (+) 768 WP_062854622.1 pimeloyl-ACP methyl ester esterase BioH -
  ACK2V4_RS00845 (ACK2V4_00845) - 181929..182393 (+) 465 WP_005459035.1 hypothetical protein -
  ACK2V4_RS00850 (ACK2V4_00850) - 182529..184850 (-) 2322 WP_062854598.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27696.93 Da        Isoelectric Point: 9.1619

>NTDB_id=1081899 ACK2V4_RS00835 WP_062854599.1 180228..180953(-) (comF) [Vibrio parahaemolyticus strain GTVSS-031]
MLSHHRQNIMHRMLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEETNIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLSQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1081899 ACK2V4_RS00835 WP_062854599.1 180228..180953(-) (comF) [Vibrio parahaemolyticus strain GTVSS-031]
ATGTTATCTCATCACAGGCAAAACATCATGCATCGTATGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAACGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAGTCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment