Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACK2IZ_RS04930 Genome accession   NZ_CP176642
Coordinates   1014188..1015945 (-) Length   585 a.a.
NCBI ID   WP_270576629.1    Uniprot ID   -
Organism   Thomasclavelia ramosa strain SFAD15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009188..1020945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2IZ_RS04910 - 1009363..1010331 (+) 969 WP_003535233.1 P1 family peptidase -
  ACK2IZ_RS04915 - 1010500..1011120 (+) 621 WP_003535234.1 ECF transporter S component -
  ACK2IZ_RS04920 - 1011394..1012242 (+) 849 WP_003535235.1 Cof-type HAD-IIB family hydrolase -
  ACK2IZ_RS04925 rcrQ 1012368..1014188 (-) 1821 WP_270372252.1 ABC transporter ATP-binding protein Regulator
  ACK2IZ_RS04930 rcrP 1014188..1015945 (-) 1758 WP_270576629.1 ABC transporter ATP-binding protein Regulator
  ACK2IZ_RS04935 - 1016055..1017110 (-) 1056 WP_003535238.1 sensor histidine kinase -
  ACK2IZ_RS04940 - 1017097..1017777 (-) 681 WP_003535239.1 response regulator transcription factor -
  ACK2IZ_RS04945 - 1017945..1018328 (-) 384 WP_003535240.1 DUF956 family protein -
  ACK2IZ_RS04950 - 1018371..1019288 (-) 918 WP_003535241.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  ACK2IZ_RS04955 - 1019312..1020127 (-) 816 WP_003535242.1 PTS mannose/fructose/sorbose transporter subunit IIC -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64758.41 Da        Isoelectric Point: 8.0417

>NTDB_id=1081843 ACK2IZ_RS04930 WP_270576629.1 1014188..1015945(-) (rcrP) [Thomasclavelia ramosa strain SFAD15]
MIKIFKNFTKKDWSLIIICLAFIILQVWLDLKLPDYMSKITMLVQTTGSTMDEIIESGVKMLGCALGSLASSVVVAIFAA
RVATNFAANLRERLFDKVQAFSMEEIGSFSTASLITRSTNDISQIQTLVVMGLQAIIKAPIMAVWAIFKIAGKSWQWTAS
TGVAVIVLLVIVGSCMIFALPKFKKLQQLTDDLNRVTRENLRGISVVRAYNAENYQENKFENANQELTSANLFANRVMAI
MSPGIQGIMSGLTLAIYWIGAILIENAAMMDKLNLFSDMVVFSTYAMQVVMAFMMLVMIFIMFPRASVSSKRIMEVLETV
PIINDGTVTVAKPGIKGQIEFKNVSFKYPDAEDYVLQNITFTVAQGETVAFIGSTGCGKSTVINLVPRFYDVTEGEVLVD
GINVKAYTQYALHNKIGYVSQKAVLFSGTIESNVAYGDNGRNNNLQNNVIDAIYTAQASDFVEASPRRYNSYVAQGGSNY
SGGQKQRISIARAICRQPEIMIFDDSFSALDYKTDQKLREALKKDCCDATKLIVAQRIGTIRDADKIIVLDKGVIVGMGT
HEDLMKNCQVYQQIARSQLSKEELE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1081843 ACK2IZ_RS04930 WP_270576629.1 1014188..1015945(-) (rcrP) [Thomasclavelia ramosa strain SFAD15]
ATGATAAAAATATTTAAAAACTTTACTAAAAAAGATTGGAGCTTAATTATTATCTGTCTAGCATTTATTATTTTACAAGT
ATGGTTAGATCTTAAACTCCCAGATTATATGTCAAAAATAACAATGCTAGTCCAAACAACAGGAAGTACAATGGATGAAA
TAATTGAGTCAGGTGTAAAGATGTTAGGATGTGCATTAGGAAGTTTAGCTTCATCGGTAGTTGTAGCAATCTTTGCAGCA
AGGGTAGCTACAAATTTTGCTGCTAATTTAAGAGAGCGATTGTTTGATAAAGTACAAGCTTTTTCAATGGAAGAAATTGG
TAGTTTCTCAACAGCAAGTCTGATTACACGTTCAACTAATGATATTTCACAAATTCAAACACTTGTTGTAATGGGATTAC
AAGCTATTATTAAGGCACCGATTATGGCTGTTTGGGCAATTTTCAAGATTGCTGGTAAAAGCTGGCAATGGACAGCTTCA
ACGGGTGTAGCTGTAATCGTTTTATTAGTTATTGTAGGAAGTTGCATGATTTTTGCATTACCAAAATTTAAAAAATTACA
ACAGTTGACAGATGATTTGAATCGGGTTACTCGTGAAAATTTAAGGGGAATAAGTGTTGTTCGGGCTTATAATGCTGAGA
ATTATCAAGAGAATAAATTTGAAAATGCCAATCAGGAGTTAACCTCAGCAAACTTGTTTGCAAACCGAGTTATGGCAATC
ATGAGTCCAGGAATTCAAGGAATCATGAGTGGTCTGACATTGGCCATTTATTGGATTGGAGCCATCCTGATTGAAAATGC
TGCTATGATGGATAAACTAAACTTATTTTCAGATATGGTGGTATTTTCTACATATGCAATGCAAGTAGTTATGGCTTTTA
TGATGCTTGTTATGATTTTTATAATGTTTCCAAGAGCATCGGTTTCATCAAAGCGAATCATGGAAGTATTAGAAACAGTA
CCAATAATTAATGATGGTACAGTAACTGTCGCTAAACCGGGTATTAAAGGACAAATTGAATTTAAAAATGTCAGTTTTAA
ATATCCTGATGCTGAAGATTATGTTTTACAAAATATTACTTTTACTGTTGCTCAAGGAGAAACAGTTGCTTTTATCGGTT
CAACTGGATGTGGTAAAAGTACAGTGATTAATCTAGTTCCACGTTTTTATGATGTAACAGAAGGTGAAGTACTCGTAGAT
GGGATTAATGTTAAAGCTTATACACAATATGCCTTACATAACAAAATCGGTTATGTATCCCAAAAAGCAGTTCTTTTTAG
TGGAACTATTGAATCTAATGTTGCCTATGGTGATAATGGTAGAAATAATAATCTTCAAAACAATGTCATTGATGCCATTT
ATACAGCTCAAGCTTCTGATTTTGTTGAGGCTTCACCACGCCGATATAATAGCTATGTTGCCCAAGGCGGTTCTAATTAC
TCAGGTGGGCAAAAGCAACGGATTTCTATTGCCCGGGCAATATGTCGTCAACCCGAAATTATGATTTTTGATGATTCGTT
TTCTGCACTAGACTATAAAACAGATCAAAAACTTCGAGAAGCTTTAAAGAAAGATTGTTGCGATGCTACCAAATTGATCG
TTGCTCAACGAATTGGTACGATTCGAGATGCTGATAAAATTATTGTTCTTGATAAAGGGGTTATTGTAGGGATGGGAACA
CATGAAGACTTAATGAAGAATTGTCAAGTTTACCAACAAATAGCTCGTTCACAGTTATCAAAGGAGGAATTAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.256

100

0.523

Multiple sequence alignment