Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACK2JG_RS02830 Genome accession   NZ_CP176639
Coordinates   670903..672774 (-) Length   623 a.a.
NCBI ID   WP_411327210.1    Uniprot ID   -
Organism   Bifidobacterium longum strain SFAD19     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 665903..677774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2JG_RS02815 - 666161..667579 (-) 1419 WP_011068650.1 MFS transporter -
  ACK2JG_RS02820 - 667661..668707 (+) 1047 WP_007052939.1 FAD:protein FMN transferase -
  ACK2JG_RS02825 rcrQ 668859..670688 (-) 1830 WP_077322299.1 ABC transporter ATP-binding protein Regulator
  ACK2JG_RS02830 rcrP 670903..672774 (-) 1872 WP_411327210.1 ABC transporter ATP-binding protein Regulator
  ACK2JG_RS02835 - 672961..673482 (-) 522 WP_032684783.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACK2JG_RS02840 - 673819..674163 (-) 345 WP_174768606.1 hypothetical protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 67978.49 Da        Isoelectric Point: 5.1886

>NTDB_id=1081819 ACK2JG_RS02830 WP_411327210.1 670903..672774(-) (rcrP) [Bifidobacterium longum strain SFAD19]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGTYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGESADVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=1081819 ACK2JG_RS02830 WP_411327210.1 670903..672774(-) (rcrP) [Bifidobacterium longum strain SFAD19]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATCGCCGATTATGGCAGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGAATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGTGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTTGCCGTCTACTGGATCGGTACCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTACTCGACACCGAG
CCGATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGTCAGCGAGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGAATCGGCGGACGTCGAGATGGCGGACA
CCTCCACTCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(60-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.025

100

0.488

Multiple sequence alignment