Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLC19224_RS05030 Genome accession   NZ_CP176605
Coordinates   937581..938309 (-) Length   242 a.a.
NCBI ID   WP_149062401.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19224     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 932581..943309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19224_RS04990 (CLC19224_00982) holA 933250..934215 (+) 966 WP_410708246.1 DNA polymerase III subunit delta -
  CLC19224_RS04995 (CLC19224_00983) rpsF 934306..934680 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLC19224_RS05000 (CLC19224_00984) - 934684..935211 (+) 528 WP_115645698.1 single-stranded DNA-binding protein -
  CLC19224_RS05005 (CLC19224_00985) rpsR 935222..935482 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLC19224_RS05010 (CLC19224_00986) - 935534..936175 (+) 642 WP_149062399.1 MarC family protein -
  CLC19224_RS05015 (CLC19224_00987) - 936157..936579 (-) 423 WP_257398687.1 hypothetical protein -
  CLC19224_RS05020 (CLC19224_00988) - 936576..937304 (-) 729 WP_257398686.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CLC19224_RS05025 (CLC19224_00989) - 937288..937584 (-) 297 WP_257398685.1 hypothetical protein -
  CLC19224_RS05030 (CLC19224_00990) proC 937581..938309 (-) 729 WP_149062401.1 pyrroline-5-carboxylate reductase Machinery gene
  CLC19224_RS05035 (CLC19224_00991) fliW 938309..938704 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLC19224_RS05040 (CLC19224_00992) bamD 938881..939537 (+) 657 WP_039668502.1 outer membrane protein assembly factor BamD -
  CLC19224_RS05045 (CLC19224_00993) lon 939537..941915 (+) 2379 WP_149062402.1 endopeptidase La -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26565.81 Da        Isoelectric Point: 7.2639

>NTDB_id=1081496 CLC19224_RS05030 WP_149062401.1 937581..938309(-) (proC) [Campylobacter lari subsp. concheus strain RM19224]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKHEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081496 CLC19224_RS05030 WP_149062401.1 937581..938309(-) (proC) [Campylobacter lari subsp. concheus strain RM19224]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAAGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCACAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAACATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTGGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACGCG
TGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment