Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLC19222_RS04630 Genome accession   NZ_CP176604
Coordinates   889636..890364 (-) Length   242 a.a.
NCBI ID   WP_257404036.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19222     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 884636..895364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19222_RS04590 (CLC19222_00907) holA 885305..886270 (+) 966 WP_257404039.1 DNA polymerase III subunit delta -
  CLC19222_RS04595 (CLC19222_00908) rpsF 886361..886735 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLC19222_RS04600 (CLC19222_00909) - 886739..887266 (+) 528 WP_115645698.1 single-stranded DNA-binding protein -
  CLC19222_RS04605 (CLC19222_00910) rpsR 887277..887537 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLC19222_RS04610 (CLC19222_00911) - 887589..888230 (+) 642 WP_257396648.1 MarC family protein -
  CLC19222_RS04615 (CLC19222_00912) - 888212..888634 (-) 423 WP_257404038.1 hypothetical protein -
  CLC19222_RS04620 (CLC19222_00913) - 888631..889359 (-) 729 WP_257404037.1 type II secretion system protein -
  CLC19222_RS04625 (CLC19222_00914) - 889343..889639 (-) 297 WP_039668500.1 hypothetical protein -
  CLC19222_RS04630 (CLC19222_00915) proC 889636..890364 (-) 729 WP_257404036.1 pyrroline-5-carboxylate reductase Machinery gene
  CLC19222_RS04635 (CLC19222_00916) fliW 890364..890759 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLC19222_RS04640 (CLC19222_00917) bamD 890936..891592 (+) 657 WP_257396646.1 outer membrane protein assembly factor BamD -
  CLC19222_RS04645 (CLC19222_00918) lon 891592..893970 (+) 2379 WP_257396645.1 endopeptidase La -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26591.85 Da        Isoelectric Point: 7.1886

>NTDB_id=1081478 CLC19222_RS04630 WP_257404036.1 889636..890364(-) (proC) [Campylobacter lari subsp. concheus strain RM19222]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKYEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081478 CLC19222_RS04630 WP_257404036.1 889636..890364(-) (proC) [Campylobacter lari subsp. concheus strain RM19222]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCATTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCAACTGCGTATTTGATGGAAAATGATTTATATAAATATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGATGCGCTCCTGCGTTT
TTGGCTTTGGTGGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACGCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment