Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLC19214_RS05255 Genome accession   NZ_CP176603
Coordinates   980449..981177 (-) Length   242 a.a.
NCBI ID   WP_149062401.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19214     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975449..986177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19214_RS05215 (CLC19214_01014) holA 976118..977083 (+) 966 WP_257396649.1 DNA polymerase III subunit delta -
  CLC19214_RS05220 (CLC19214_01015) rpsF 977174..977548 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLC19214_RS05225 (CLC19214_01016) - 977552..978079 (+) 528 WP_115645698.1 single-stranded DNA-binding protein -
  CLC19214_RS05230 (CLC19214_01017) rpsR 978090..978350 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLC19214_RS05235 (CLC19214_01018) - 978402..979043 (+) 642 WP_257396648.1 MarC family protein -
  CLC19214_RS05240 (CLC19214_01019) - 979025..979447 (-) 423 WP_039668499.1 hypothetical protein -
  CLC19214_RS05245 (CLC19214_01020) - 979444..980172 (-) 729 WP_257396647.1 type II secretion system protein -
  CLC19214_RS05250 (CLC19214_01021) - 980156..980452 (-) 297 WP_039668500.1 hypothetical protein -
  CLC19214_RS05255 (CLC19214_01022) proC 980449..981177 (-) 729 WP_149062401.1 pyrroline-5-carboxylate reductase Machinery gene
  CLC19214_RS05260 (CLC19214_01023) fliW 981177..981572 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLC19214_RS05265 (CLC19214_01024) bamD 981749..982405 (+) 657 WP_257396646.1 outer membrane protein assembly factor BamD -
  CLC19214_RS05270 (CLC19214_01025) lon 982405..984783 (+) 2379 WP_257396645.1 endopeptidase La -
  CLC19214_RS05275 - 984799..985032 (-) 234 WP_257396644.1 hypothetical protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26565.81 Da        Isoelectric Point: 7.2639

>NTDB_id=1081461 CLC19214_RS05255 WP_149062401.1 980449..981177(-) (proC) [Campylobacter lari subsp. concheus strain RM19214]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKHEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081461 CLC19214_RS05255 WP_149062401.1 980449..981177(-) (proC) [Campylobacter lari subsp. concheus strain RM19214]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCATTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCACAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAACATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACACG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment