Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLC19175_RS05085 Genome accession   NZ_CP176601
Coordinates   956691..957419 (-) Length   242 a.a.
NCBI ID   WP_149062401.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19175     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 951691..962419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19175_RS05045 (CLC19175_01000) holA 952360..953325 (+) 966 WP_039668496.1 DNA polymerase III subunit delta -
  CLC19175_RS05050 (CLC19175_01001) rpsF 953416..953790 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLC19175_RS05055 (CLC19175_01002) - 953794..954321 (+) 528 WP_115645698.1 single-stranded DNA-binding protein -
  CLC19175_RS05060 (CLC19175_01003) rpsR 954332..954592 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLC19175_RS05065 (CLC19175_01004) - 954644..955285 (+) 642 WP_039668498.1 MarC family protein -
  CLC19175_RS05070 (CLC19175_01005) - 955267..955689 (-) 423 WP_039668499.1 hypothetical protein -
  CLC19175_RS05075 (CLC19175_01006) - 955686..956414 (-) 729 WP_257402112.1 type II secretion system protein -
  CLC19175_RS05080 (CLC19175_01007) - 956398..956694 (-) 297 WP_039668500.1 hypothetical protein -
  CLC19175_RS05085 (CLC19175_01008) proC 956691..957419 (-) 729 WP_149062401.1 pyrroline-5-carboxylate reductase Machinery gene
  CLC19175_RS05090 (CLC19175_01009) fliW 957419..957814 (-) 396 WP_220517492.1 flagellar assembly protein FliW -
  CLC19175_RS05095 (CLC19175_01010) bamD 957991..958647 (+) 657 WP_220517493.1 outer membrane protein assembly factor BamD -
  CLC19175_RS05100 (CLC19175_01011) lon 958647..961028 (+) 2382 WP_257402111.1 endopeptidase La -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26565.81 Da        Isoelectric Point: 7.2639

>NTDB_id=1081427 CLC19175_RS05085 WP_149062401.1 956691..957419(-) (proC) [Campylobacter lari subsp. concheus strain RM19175]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKHEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081427 CLC19175_RS05085 WP_149062401.1 956691..957419(-) (proC) [Campylobacter lari subsp. concheus strain RM19175]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAAGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCACAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAACATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTGGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACGCG
TGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment