Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLC19168_RS04600 Genome accession   NZ_CP176600
Coordinates   885398..886126 (-) Length   242 a.a.
NCBI ID   WP_149062401.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19168     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880398..891126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19168_RS04560 (CLC19168_00904) holA 881067..882032 (+) 966 WP_257402535.1 DNA polymerase III subunit delta -
  CLC19168_RS04565 (CLC19168_00905) rpsF 882123..882497 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLC19168_RS04570 (CLC19168_00906) - 882501..883028 (+) 528 WP_039668497.1 single-stranded DNA-binding protein -
  CLC19168_RS04575 (CLC19168_00907) rpsR 883039..883299 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLC19168_RS04580 (CLC19168_00908) - 883351..883992 (+) 642 WP_149062399.1 MarC family protein -
  CLC19168_RS04585 (CLC19168_00909) - 883974..884396 (-) 423 WP_039668499.1 hypothetical protein -
  CLC19168_RS04590 (CLC19168_00910) - 884393..885121 (-) 729 WP_240388442.1 hypothetical protein -
  CLC19168_RS04595 (CLC19168_00911) - 885105..885401 (-) 297 WP_039668500.1 hypothetical protein -
  CLC19168_RS04600 (CLC19168_00912) proC 885398..886126 (-) 729 WP_149062401.1 pyrroline-5-carboxylate reductase Machinery gene
  CLC19168_RS04605 (CLC19168_00913) fliW 886126..886521 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLC19168_RS04610 (CLC19168_00914) bamD 886698..887354 (+) 657 WP_039668502.1 outer membrane protein assembly factor BamD -
  CLC19168_RS04615 (CLC19168_00915) lon 887354..889735 (+) 2382 WP_257402536.1 endopeptidase La -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26565.81 Da        Isoelectric Point: 7.2639

>NTDB_id=1081411 CLC19168_RS04600 WP_149062401.1 885398..886126(-) (proC) [Campylobacter lari subsp. concheus strain RM19168]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKHEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081411 CLC19168_RS04600 WP_149062401.1 885398..886126(-) (proC) [Campylobacter lari subsp. concheus strain RM19168]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAAGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCACAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAACATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTGGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACGCG
TGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment