Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | AACH42_RS08360 | Genome accession | NZ_AP029022 |
| Coordinates | 1904646..1905299 (+) | Length | 217 a.a. |
| NCBI ID | WP_338614949.1 | Uniprot ID | - |
| Organism | Chryseobacterium gambrini strain DW100 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1899646..1910299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH42_RS08345 (CRDW_16480) | aceA | 1899884..1901164 (-) | 1281 | WP_256037994.1 | isocitrate lyase | - |
| AACH42_RS08350 (CRDW_16490) | aceB | 1901294..1902868 (-) | 1575 | WP_338614947.1 | malate synthase A | - |
| AACH42_RS08355 (CRDW_16500) | - | 1902994..1904469 (+) | 1476 | WP_338614948.1 | helix-turn-helix transcriptional regulator | - |
| AACH42_RS08360 (CRDW_16510) | comF | 1904646..1905299 (+) | 654 | WP_338614949.1 | phosphoribosyltransferase family protein | Machinery gene |
| AACH42_RS08365 (CRDW_16520) | - | 1905340..1906539 (-) | 1200 | WP_338614951.1 | cytochrome c peroxidase | - |
| AACH42_RS08370 (CRDW_16530) | - | 1906627..1907973 (-) | 1347 | WP_338614952.1 | YHYH protein | - |
| AACH42_RS08375 (CRDW_16540) | - | 1908036..1909106 (-) | 1071 | WP_338614953.1 | cytochrome c peroxidase | - |
| AACH42_RS08380 (CRDW_16550) | - | 1909128..1909805 (-) | 678 | WP_338614954.1 | MbnP family protein | - |
| AACH42_RS08385 (CRDW_16560) | - | 1909802..1910251 (-) | 450 | WP_338614955.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25550.49 Da Isoelectric Point: 8.0741
>NTDB_id=108139 AACH42_RS08360 WP_338614949.1 1904646..1905299(+) (comF) [Chryseobacterium gambrini strain DW100]
MMLDILFPNRCIRCSRIIDANFPVCNLCFDQIHFTHNDYSEHNFVKEKCSLLFPIENAFALMQFEKENVSRKLIHELKYR
NREKIGKILAEWTTERLDFQNQKPDLLVTVPLHPRKLKERGYNQLHWFTETLSEFYAIPFDHDVMKRNHYSKAQALKDKQ
NRLKTENTFSMTKNISGKHILLIDDVFTTGNTLASIAWEILKSGDNKVSVLVMAIDE
MMLDILFPNRCIRCSRIIDANFPVCNLCFDQIHFTHNDYSEHNFVKEKCSLLFPIENAFALMQFEKENVSRKLIHELKYR
NREKIGKILAEWTTERLDFQNQKPDLLVTVPLHPRKLKERGYNQLHWFTETLSEFYAIPFDHDVMKRNHYSKAQALKDKQ
NRLKTENTFSMTKNISGKHILLIDDVFTTGNTLASIAWEILKSGDNKVSVLVMAIDE
Nucleotide
Download Length: 654 bp
>NTDB_id=108139 AACH42_RS08360 WP_338614949.1 1904646..1905299(+) (comF) [Chryseobacterium gambrini strain DW100]
ATGATGCTCGATATTTTATTTCCGAATCGCTGTATTCGGTGCAGCCGGATAATTGATGCCAATTTTCCGGTCTGTAATCT
TTGCTTTGACCAGATTCACTTTACCCACAACGATTATTCTGAACATAATTTTGTTAAAGAAAAATGCAGTCTTCTTTTTC
CTATCGAAAATGCTTTTGCACTCATGCAGTTTGAAAAAGAAAATGTGAGCCGAAAATTAATTCATGAACTGAAGTACCGG
AATCGGGAGAAAATAGGGAAAATTTTGGCTGAATGGACGACGGAAAGACTGGATTTTCAAAATCAGAAGCCTGATCTTTT
GGTGACGGTTCCGCTTCATCCGAGAAAATTAAAAGAAAGAGGATATAATCAACTGCATTGGTTCACCGAAACGCTTTCAG
AATTTTATGCTATTCCGTTTGATCATGATGTGATGAAAAGAAATCATTATTCCAAAGCTCAGGCTTTGAAGGATAAACAG
AACCGGCTGAAAACAGAAAATACATTTTCAATGACTAAAAATATTTCAGGTAAGCATATTTTGTTAATTGATGATGTTTT
TACAACGGGAAATACGCTGGCTTCAATTGCATGGGAGATTCTGAAATCGGGAGATAATAAAGTGAGTGTTTTGGTTATGG
CGATTGATGAATAA
ATGATGCTCGATATTTTATTTCCGAATCGCTGTATTCGGTGCAGCCGGATAATTGATGCCAATTTTCCGGTCTGTAATCT
TTGCTTTGACCAGATTCACTTTACCCACAACGATTATTCTGAACATAATTTTGTTAAAGAAAAATGCAGTCTTCTTTTTC
CTATCGAAAATGCTTTTGCACTCATGCAGTTTGAAAAAGAAAATGTGAGCCGAAAATTAATTCATGAACTGAAGTACCGG
AATCGGGAGAAAATAGGGAAAATTTTGGCTGAATGGACGACGGAAAGACTGGATTTTCAAAATCAGAAGCCTGATCTTTT
GGTGACGGTTCCGCTTCATCCGAGAAAATTAAAAGAAAGAGGATATAATCAACTGCATTGGTTCACCGAAACGCTTTCAG
AATTTTATGCTATTCCGTTTGATCATGATGTGATGAAAAGAAATCATTATTCCAAAGCTCAGGCTTTGAAGGATAAACAG
AACCGGCTGAAAACAGAAAATACATTTTCAATGACTAAAAATATTTCAGGTAAGCATATTTTGTTAATTGATGATGTTTT
TACAACGGGAAATACGCTGGCTTCAATTGCATGGGAGATTCTGAAATCGGGAGATAATAAAGTGAGTGTTTTGGTTATGG
CGATTGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.613 |
100 |
0.516 |