Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLC19153_RS05250 Genome accession   NZ_CP176597
Coordinates   980989..981717 (-) Length   242 a.a.
NCBI ID   WP_149062401.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19153     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975989..986717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19153_RS05210 (CLC19153_01017) holA 976658..977623 (+) 966 WP_257396649.1 DNA polymerase III subunit delta -
  CLC19153_RS05215 (CLC19153_01018) rpsF 977714..978088 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLC19153_RS05220 (CLC19153_01019) - 978092..978619 (+) 528 WP_115645698.1 single-stranded DNA-binding protein -
  CLC19153_RS05225 (CLC19153_01020) rpsR 978630..978890 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CLC19153_RS05230 (CLC19153_01021) - 978942..979583 (+) 642 WP_257396648.1 MarC family protein -
  CLC19153_RS05235 (CLC19153_01022) - 979565..979987 (-) 423 WP_039668499.1 hypothetical protein -
  CLC19153_RS05240 (CLC19153_01023) - 979984..980712 (-) 729 WP_257396647.1 type II secretion system protein -
  CLC19153_RS05245 (CLC19153_01024) - 980696..980992 (-) 297 WP_039668500.1 hypothetical protein -
  CLC19153_RS05250 (CLC19153_01025) proC 980989..981717 (-) 729 WP_149062401.1 pyrroline-5-carboxylate reductase Machinery gene
  CLC19153_RS05255 (CLC19153_01026) fliW 981717..982112 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLC19153_RS05260 (CLC19153_01027) bamD 982289..982945 (+) 657 WP_257396646.1 outer membrane protein assembly factor BamD -
  CLC19153_RS05265 (CLC19153_01028) lon 982945..985323 (+) 2379 WP_257396645.1 endopeptidase La -
  CLC19153_RS05270 (CLC19153_01029) - 985339..985572 (-) 234 WP_257396644.1 hypothetical protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26565.81 Da        Isoelectric Point: 7.2639

>NTDB_id=1081359 CLC19153_RS05250 WP_149062401.1 980989..981717(-) (proC) [Campylobacter lari subsp. concheus strain RM19153]
MSEIYILGNGAMASAIAKGLKDTYKVVVVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDLYKHEIISLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081359 CLC19153_RS05250 WP_149062401.1 980989..981717(-) (proC) [Campylobacter lari subsp. concheus strain RM19153]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TGTTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCATTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCACAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAACATGAAATTATATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACACG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTGACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment