Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC16711_RS04955 Genome accession   NZ_CP176595
Coordinates   935926..936654 (-) Length   242 a.a.
NCBI ID   WP_257939246.1    Uniprot ID   -
Organism   Campylobacter lari strain RM16711     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930926..941654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16711_RS04915 (UPTC16711_00977) holA 931594..932559 (+) 966 WP_257939249.1 DNA polymerase III subunit delta -
  UPTC16711_RS04920 (UPTC16711_00978) rpsF 932650..933024 (+) 375 WP_257939248.1 30S ribosomal protein S6 -
  UPTC16711_RS04925 (UPTC16711_00979) - 933028..933555 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  UPTC16711_RS04930 (UPTC16711_00980) rpsR 933567..933827 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC16711_RS04935 (UPTC16711_00981) - 933879..934520 (+) 642 WP_047208375.1 MarC family protein -
  UPTC16711_RS04940 (UPTC16711_00982) - 934502..934924 (-) 423 WP_039619645.1 hypothetical protein -
  UPTC16711_RS04945 (UPTC16711_00983) - 934921..935649 (-) 729 WP_257939247.1 type II secretion system protein -
  UPTC16711_RS04950 (UPTC16711_00984) - 935633..935929 (-) 297 WP_039628432.1 hypothetical protein -
  UPTC16711_RS04955 (UPTC16711_00985) proC 935926..936654 (-) 729 WP_257939246.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC16711_RS04960 (UPTC16711_00986) fliW 936654..937049 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC16711_RS04965 (UPTC16711_00987) bamD 937226..937882 (+) 657 WP_257939245.1 outer membrane protein assembly factor BamD -
  UPTC16711_RS04970 (UPTC16711_00988) lon 937882..940260 (+) 2379 WP_257939244.1 endopeptidase La -
  UPTC16711_RS04975 (UPTC16711_00989) - 940275..941648 (-) 1374 WP_410688705.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26560.79 Da        Isoelectric Point: 7.6880

>NTDB_id=1081323 UPTC16711_RS04955 WP_257939246.1 935926..936654(-) (proC) [Campylobacter lari strain RM16711]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNKKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081323 UPTC16711_RS04955 WP_257939246.1 935926..936654(-) (proC) [Campylobacter lari strain RM16711]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGTTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATAAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGCTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTAAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574

Multiple sequence alignment