Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC15624_RS04780 Genome accession   NZ_CP176593
Coordinates   905484..906212 (-) Length   242 a.a.
NCBI ID   WP_257942428.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15624     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 900484..911212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15624_RS04740 (UPTC15624_00937) holA 901152..902117 (+) 966 WP_257942432.1 DNA polymerase III subunit delta -
  UPTC15624_RS04745 (UPTC15624_00938) rpsF 902208..902582 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC15624_RS04750 (UPTC15624_00939) - 902586..903113 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  UPTC15624_RS04755 (UPTC15624_00940) rpsR 903125..903385 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC15624_RS04760 (UPTC15624_00941) - 903437..904078 (+) 642 WP_047208375.1 MarC family protein -
  UPTC15624_RS04765 (UPTC15624_00942) - 904060..904482 (-) 423 WP_257942431.1 hypothetical protein -
  UPTC15624_RS04770 (UPTC15624_00943) - 904479..905207 (-) 729 WP_257942430.1 hypothetical protein -
  UPTC15624_RS04775 (UPTC15624_00944) - 905191..905487 (-) 297 WP_257942429.1 hypothetical protein -
  UPTC15624_RS04780 (UPTC15624_00945) proC 905484..906212 (-) 729 WP_257942428.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC15624_RS04785 (UPTC15624_00946) fliW 906212..906607 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC15624_RS04790 (UPTC15624_00947) bamD 906784..907440 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC15624_RS04795 (UPTC15624_00948) lon 907440..909818 (+) 2379 WP_257942427.1 endopeptidase La -
  UPTC15624_RS04800 (UPTC15624_00949) - 909833..911206 (-) 1374 WP_373416663.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26515.64 Da        Isoelectric Point: 6.7168

>NTDB_id=1081286 UPTC15624_RS04780 WP_257942428.1 905484..906212(-) (proC) [Campylobacter lari strain RM15624]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTAFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081286 UPTC15624_RS04780 WP_257942428.1 905484..906212(-) (proC) [Campylobacter lari strain RM15624]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAGGTTTTATCTTACGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTGCTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACGGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGCGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
TGCAAGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment