Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5105_RS04705 Genome accession   NZ_CP176589
Coordinates   898829..899557 (-) Length   242 a.a.
NCBI ID   WP_039628434.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:28     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893829..904557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5105_RS04665 (UPTC5105_00925) holA 894497..895462 (+) 966 WP_257904332.1 DNA polymerase III subunit delta -
  UPTC5105_RS04670 (UPTC5105_00926) rpsF 895553..895927 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC5105_RS04675 (UPTC5105_00927) - 895931..896458 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  UPTC5105_RS04680 (UPTC5105_00928) rpsR 896470..896730 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5105_RS04685 (UPTC5105_00929) - 896782..897423 (+) 642 WP_047208375.1 MarC family protein -
  UPTC5105_RS04690 (UPTC5105_00930) - 897405..897827 (-) 423 WP_039619645.1 hypothetical protein -
  UPTC5105_RS04695 (UPTC5105_00931) - 897824..898552 (-) 729 WP_257904333.1 type II secretion system protein -
  UPTC5105_RS04700 (UPTC5105_00932) - 898536..898832 (-) 297 WP_039628432.1 hypothetical protein -
  UPTC5105_RS04705 (UPTC5105_00933) proC 898829..899557 (-) 729 WP_039628434.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5105_RS04710 (UPTC5105_00934) fliW 899557..899952 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5105_RS04715 (UPTC5105_00935) bamD 900129..900785 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC5105_RS04720 (UPTC5105_00936) lon 900785..903163 (+) 2379 WP_257904334.1 endopeptidase La -
  UPTC5105_RS04725 (UPTC5105_00937) - 903178..904551 (-) 1374 WP_373274078.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26561.73 Da        Isoelectric Point: 6.7094

>NTDB_id=1081215 UPTC5105_RS04705 WP_039628434.1 898829..899557(-) (proC) [Campylobacter lari strain S3:28]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081215 UPTC5105_RS04705 WP_039628434.1 898829..899557(-) (proC) [Campylobacter lari strain S3:28]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAGGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGCTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment