Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5098_RS05200 Genome accession   NZ_CP176587
Coordinates   974746..975474 (-) Length   242 a.a.
NCBI ID   WP_258107545.1    Uniprot ID   -
Organism   Campylobacter lari strain 2a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 969746..980474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5098_RS05160 (UPTC5098_01017) holA 970411..971376 (+) 966 WP_257936491.1 DNA polymerase III subunit delta -
  UPTC5098_RS05165 (UPTC5098_01018) rpsF 971467..971841 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC5098_RS05170 (UPTC5098_01019) - 971845..972375 (+) 531 WP_133318788.1 single-stranded DNA-binding protein -
  UPTC5098_RS05175 (UPTC5098_01020) rpsR 972386..972646 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5098_RS05180 (UPTC5098_01021) - 972699..973340 (+) 642 WP_258107544.1 MarC family protein -
  UPTC5098_RS05185 (UPTC5098_01022) - 973322..973744 (-) 423 WP_257942431.1 hypothetical protein -
  UPTC5098_RS05190 (UPTC5098_01023) - 973741..974469 (-) 729 WP_257942430.1 hypothetical protein -
  UPTC5098_RS05195 (UPTC5098_01024) - 974453..974749 (-) 297 WP_214114776.1 hypothetical protein -
  UPTC5098_RS05200 (UPTC5098_01025) proC 974746..975474 (-) 729 WP_258107545.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5098_RS05205 (UPTC5098_01026) fliW 975474..975869 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5098_RS05210 (UPTC5098_01027) - 976046..976702 (+) 657 WP_258107546.1 outer membrane protein assembly factor BamD -
  UPTC5098_RS05215 (UPTC5098_01028) lon 976702..979080 (+) 2379 WP_257942427.1 endopeptidase La -
  UPTC5098_RS05220 (UPTC5098_01029) - 979095..980468 (-) 1374 WP_373416663.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26543.70 Da        Isoelectric Point: 6.7168

>NTDB_id=1081181 UPTC5098_RS05200 WP_258107545.1 974746..975474(-) (proC) [Campylobacter lari strain 2a]
MSEIYILGNGAMASAIAKGLKDTYKVVIVVRDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTAFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081181 UPTC5098_RS05200 WP_258107545.1 974746..975474(-) (proC) [Campylobacter lari strain 2a]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGATACTTATAAAGTAGT
TATTGTTGTTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAGGTTTTATCTTACGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTGCTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACGGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGCGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
TGCAAGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment