Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5084_RS05330 Genome accession   NZ_CP176585
Coordinates   991367..992095 (-) Length   242 a.a.
NCBI ID   WP_257941771.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:34     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 986367..997095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5084_RS05290 (UPTC5084_01040) holA 987032..987997 (+) 966 WP_257941775.1 DNA polymerase III subunit delta -
  UPTC5084_RS05295 (UPTC5084_01041) rpsF 988088..988462 (+) 375 WP_257937788.1 30S ribosomal protein S6 -
  UPTC5084_RS05300 (UPTC5084_01042) - 988466..988996 (+) 531 WP_257941774.1 single-stranded DNA-binding protein -
  UPTC5084_RS05305 (UPTC5084_01043) rpsR 989008..989268 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5084_RS05310 (UPTC5084_01044) - 989320..989961 (+) 642 WP_047208375.1 MarC family protein -
  UPTC5084_RS05315 (UPTC5084_01045) - 989943..990365 (-) 423 WP_039619645.1 hypothetical protein -
  UPTC5084_RS05320 (UPTC5084_01046) - 990362..991090 (-) 729 WP_257941773.1 type II secretion system protein -
  UPTC5084_RS05325 (UPTC5084_01047) - 991074..991370 (-) 297 WP_257941772.1 hypothetical protein -
  UPTC5084_RS05330 (UPTC5084_01048) proC 991367..992095 (-) 729 WP_257941771.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5084_RS05335 (UPTC5084_01049) fliW 992095..992490 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5084_RS05340 (UPTC5084_01050) - 992643..993299 (+) 657 WP_257941770.1 outer membrane protein assembly factor BamD -
  UPTC5084_RS05345 (UPTC5084_01051) lon 993299..995677 (+) 2379 WP_214118257.1 endopeptidase La -
  UPTC5084_RS05350 (UPTC5084_01052) - 995692..997065 (-) 1374 WP_410708395.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26475.55 Da        Isoelectric Point: 5.4146

>NTDB_id=1081146 UPTC5084_RS05330 WP_257941771.1 991367..992095(-) (proC) [Campylobacter lari strain S3:34]
MSEIYILGNGAMASAIAKGISDAYEVIIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELARACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081146 UPTC5084_RS05330 WP_257941771.1 991367..992095(-) (proC) [Campylobacter lari strain S3:34]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGCATAAGTGATGCTTATGAAGTGAT
AATAGTTGCAAGAGATTTAAAAAAAGCAAGTAGTTTAAATTTAGAGGTTTTATCTTACGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGCGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTGCTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment