Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5083_RS04670 Genome accession   NZ_CP176584
Coordinates   903413..904141 (-) Length   242 a.a.
NCBI ID   WP_257936495.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:26     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 898413..909141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5083_RS04630 (UPTC5083_00922) holA 899081..900046 (+) 966 WP_257936491.1 DNA polymerase III subunit delta -
  UPTC5083_RS04635 (UPTC5083_00923) rpsF 900137..900511 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC5083_RS04640 (UPTC5083_00924) - 900515..901042 (+) 528 WP_257936492.1 single-stranded DNA-binding protein -
  UPTC5083_RS04645 (UPTC5083_00925) rpsR 901054..901314 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5083_RS04650 (UPTC5083_00926) - 901366..902007 (+) 642 WP_047208375.1 MarC family protein -
  UPTC5083_RS04655 (UPTC5083_00927) - 901989..902411 (-) 423 WP_039619645.1 hypothetical protein -
  UPTC5083_RS04660 (UPTC5083_00928) - 902408..903136 (-) 729 WP_257936493.1 type II secretion system protein -
  UPTC5083_RS04665 (UPTC5083_00929) - 903120..903416 (-) 297 WP_257936494.1 hypothetical protein -
  UPTC5083_RS04670 (UPTC5083_00930) proC 903413..904141 (-) 729 WP_257936495.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5083_RS04675 (UPTC5083_00931) fliW 904141..904536 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5083_RS04680 (UPTC5083_00932) bamD 904713..905369 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC5083_RS04685 (UPTC5083_00933) lon 905369..907747 (+) 2379 WP_214126804.1 endopeptidase La -
  UPTC5083_RS04690 (UPTC5083_00934) - 907762..909135 (-) 1374 WP_039628438.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26592.70 Da        Isoelectric Point: 5.7983

>NTDB_id=1081128 UPTC5083_RS04670 WP_257936495.1 903413..904141(-) (proC) [Campylobacter lari strain S3:26]
MSEIYILGNGAMASAIAEGLKDTYKVVIVTRDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081128 UPTC5083_RS04670 WP_257936495.1 903413..904141(-) (proC) [Campylobacter lari strain S3:26]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTGAAGGTTTAAAAGATACTTATAAAGTAGT
TATTGTTACTAGGGATTTAAAAAAAGCTAGTAGTTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGCTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment