Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5055_RS05000 Genome accession   NZ_CP176582
Coordinates   958299..959027 (-) Length   242 a.a.
NCBI ID   WP_257943662.1    Uniprot ID   -
Organism   Campylobacter lari strain 257     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 953299..964027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5055_RS04960 (UPTC5055_000979) holA 953969..954934 (+) 966 WP_114640410.1 DNA polymerase III subunit delta -
  UPTC5055_RS04965 (UPTC5055_000980) rpsF 955026..955400 (+) 375 WP_114640411.1 30S ribosomal protein S6 -
  UPTC5055_RS04970 (UPTC5055_000981) - 955404..955931 (+) 528 WP_039626411.1 single-stranded DNA-binding protein -
  UPTC5055_RS04975 (UPTC5055_000982) rpsR 955943..956203 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5055_RS04980 (UPTC5055_000983) - 956252..956893 (+) 642 WP_039626413.1 MarC family protein -
  UPTC5055_RS04985 (UPTC5055_000984) - 956875..957297 (-) 423 WP_257943664.1 hypothetical protein -
  UPTC5055_RS04990 (UPTC5055_000985) - 957294..958022 (-) 729 WP_257943663.1 type II secretion system protein -
  UPTC5055_RS04995 (UPTC5055_000986) - 958006..958302 (-) 297 WP_039626416.1 hypothetical protein -
  UPTC5055_RS05000 (UPTC5055_000987) proC 958299..959027 (-) 729 WP_257943662.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5055_RS05005 (UPTC5055_000988) fliW 959027..959422 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5055_RS05010 (UPTC5055_000989) bamD 959599..960255 (+) 657 WP_039626420.1 outer membrane protein assembly factor BamD -
  UPTC5055_RS05015 (UPTC5055_000990) lon 960255..962633 (+) 2379 WP_039626422.1 endopeptidase La -
  UPTC5055_RS05020 (UPTC5055_000991) - 962648..964021 (-) 1374 WP_039626424.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26549.66 Da        Isoelectric Point: 6.7168

>NTDB_id=1081094 UPTC5055_RS05000 WP_257943662.1 958299..959027(-) (proC) [Campylobacter lari strain 257]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYEFTRASFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081094 UPTC5055_RS05000 WP_257943662.1 958299..959027(-) (proC) [Campylobacter lari strain 257]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAGGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTCAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTAATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCTATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGTTGTGCTCCTGCGTTT
TTGGCTTTGGTGGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGTTTACTCG
TGCAAGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574

Multiple sequence alignment