Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5050_RS05030 Genome accession   NZ_CP176581
Coordinates   964338..965066 (-) Length   242 a.a.
NCBI ID   WP_257937789.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:81     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 959338..970066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5050_RS04990 (UPTC5050_0976) holA 960006..960971 (+) 966 WP_257937787.1 DNA polymerase III subunit delta -
  UPTC5050_RS04995 (UPTC5050_0977) rpsF 961062..961436 (+) 375 WP_257937788.1 30S ribosomal protein S6 -
  UPTC5050_RS05000 (UPTC5050_0978) - 961440..961967 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  UPTC5050_RS05005 (UPTC5050_0979) rpsR 961979..962239 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5050_RS05010 (UPTC5050_0980) - 962291..962932 (+) 642 WP_047208375.1 MarC family protein -
  UPTC5050_RS05015 (UPTC5050_0981) - 962914..963336 (-) 423 WP_039619645.1 hypothetical protein -
  UPTC5050_RS05020 (UPTC5050_0982) - 963333..964061 (-) 729 WP_047208376.1 type II secretion system protein -
  UPTC5050_RS05025 (UPTC5050_0983) - 964045..964341 (-) 297 WP_039628432.1 hypothetical protein -
  UPTC5050_RS05030 (UPTC5050_0984) proC 964338..965066 (-) 729 WP_257937789.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5050_RS05035 (UPTC5050_0985) fliW 965066..965461 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5050_RS05040 (UPTC5050_0986) bamD 965614..966270 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC5050_RS05045 (UPTC5050_0987) lon 966270..968648 (+) 2379 WP_257904334.1 endopeptidase La -
  UPTC5050_RS05050 (UPTC5050_0988) - 968663..970036 (-) 1374 WP_373274412.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26533.59 Da        Isoelectric Point: 5.4146

>NTDB_id=1081075 UPTC5050_RS05030 WP_257937789.1 964338..965066(-) (proC) [Campylobacter lari strain S3:81]
MSEIYILGNGAMASAIAKGISDAYEVIIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYRDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1081075 UPTC5050_RS05030 WP_257937789.1 964338..965066(-) (proC) [Campylobacter lari strain S3:81]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGCATAAGTGATGCTTATGAAGTGAT
AATAGTTGCAAGAGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAGGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAGAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574

Multiple sequence alignment