Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACK2WG_RS08675 Genome accession   NZ_CP176536
Coordinates   1678051..1678830 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus spizizenii strain 29-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673051..1683830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS08655 (ACK2WG_08655) trmFO 1673744..1675051 (+) 1308 WP_061187458.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACK2WG_RS08660 (ACK2WG_08660) xerC 1675119..1676033 (+) 915 WP_061187459.1 tyrosine recombinase XerC -
  ACK2WG_RS08665 (ACK2WG_08665) clpQ 1676046..1676591 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACK2WG_RS08670 (ACK2WG_08670) hslU 1676608..1678011 (+) 1404 WP_014113785.1 HslU--HslV peptidase ATPase subunit -
  ACK2WG_RS08675 (ACK2WG_08675) codY 1678051..1678830 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACK2WG_RS08680 (ACK2WG_08680) flgB 1679212..1679601 (+) 390 WP_014113786.1 flagellar basal body rod protein FlgB -
  ACK2WG_RS08685 (ACK2WG_08685) flgC 1679601..1680053 (+) 453 WP_014113787.1 flagellar basal body rod protein FlgC -
  ACK2WG_RS08690 (ACK2WG_08690) fliE 1680065..1680385 (+) 321 WP_014476803.1 flagellar hook-basal body complex protein FliE -
  ACK2WG_RS08695 (ACK2WG_08695) fliF 1680431..1682041 (+) 1611 WP_080010075.1 flagellar basal-body MS-ring/collar protein FliF -
  ACK2WG_RS08700 (ACK2WG_08700) fliG 1682054..1683070 (+) 1017 WP_003220860.1 flagellar motor switch protein FliG -
  ACK2WG_RS08705 (ACK2WG_08705) fliH 1683063..1683815 (+) 753 WP_061187460.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1080775 ACK2WG_RS08675 WP_003220850.1 1678051..1678830(+) (codY) [Bacillus spizizenii strain 29-4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1080775 ACK2WG_RS08675 WP_003220850.1 1678051..1678830(+) (codY) [Bacillus spizizenii strain 29-4]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAGCTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGCATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGTAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAACTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment