Detailed information NTG1080687

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACKW6F_RS12515
• Genome accession: NZ_CP176527
• Coordinates: 2458218..2460602 (-)
• Length: 794 a.a.
• NCBI ID: WP_149126431.1
• Uniprot ID: -
• Organism: Bacillus safensis strain D-62
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2453218..2465602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKW6F_RS12480 (ACKW6F_12480)	-	2454172..2454900 (+)	729	WP_024423116.1	amino acid ABC transporter ATP-binding protein	-
ACKW6F_RS12485 (ACKW6F_12485)	-	2454914..2455723 (+)	810	WP_126681537.1	transporter substrate-binding domain-containing protein	-
ACKW6F_RS12490 (ACKW6F_12490)	-	2455801..2456454 (+)	654	WP_024423118.1	amino acid ABC transporter permease	-
ACKW6F_RS12495 (ACKW6F_12495)	-	2456470..2457120 (+)	651	WP_056767967.1	amino acid ABC transporter permease	-
ACKW6F_RS12500 (ACKW6F_12500)	-	2457231..2457362 (-)	132	WP_003216198.1	YrzQ family protein	-
ACKW6F_RS12505 (ACKW6F_12505)	-	2457383..2457574 (-)	192	WP_003216308.1	hypothetical protein	-
ACKW6F_RS12510 (ACKW6F_12510)	-	2457588..2458046 (-)	459	WP_244948480.1	PRC-barrel domain-containing protein	-
ACKW6F_RS12515 (ACKW6F_12515)	recD2	2458218..2460602 (-)	2385	WP_149126431.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACKW6F_RS12520 (ACKW6F_12520)	-	2460622..2461275 (-)	654	WP_025092425.1	tetratricopeptide repeat protein	-
ACKW6F_RS12525 (ACKW6F_12525)	mnmA	2461335..2462453 (-)	1119	WP_149126430.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACKW6F_RS12530 (ACKW6F_12530)	-	2462548..2463690 (-)	1143	WP_044331688.1	cysteine desulfurase family protein	-
ACKW6F_RS12535 (ACKW6F_12535)	cymR	2463709..2464128 (-)	420	WP_024423125.1	cysteine metabolism transcriptional regulator CymR	-
ACKW6F_RS12540 (ACKW6F_12540)	-	2464337..2465602 (+)	1266	WP_025092426.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89073.64 Da
• Isoelectric Point: 5.2653

>NTDB_id=1080687 ACKW6F_RS12515 WP_149126431.1 2458218..2460602(-) (recD2) [Bacillus safensis strain D-62]
MQEHPDQMKLEDEPFLKGTIQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNDYKVTEMDVANQIIALGEGKEMIIEDDRCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASKAVPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSADQMKEVI
EKVVSNAAQKGFSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTEQIMDAELEALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=1080687 ACKW6F_RS12515 WP_149126431.1 2458218..2460602(-) (recD2) [Bacillus safensis strain D-62]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACCATTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTAAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAGGAAACCTACACTTTCTATGGCAAAGTGACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCCACTCATTTTCAAAAGGAAGTGCCGACAACGAAGCAAGGCATCATACATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGGAAAAAGACGGCTGAAGAAATCGTGGGGAAGCTTGGTAATCAGACGCTTCATAAGATTATGCGTGACC
CAGCTGTTTTGTATGATGTACCGCGCTTATCAAAAAAGAAGGCGGATAAGCTTGCCGCAGCGCTTCAGGAGCATCAAGGG
CTGGAACAAATCATGATCAGCCTGAATCAGTATGGCTTTGGTCCGCAGCTCAGCATGAAGATTTACCAAGTATACGAGAG
TGAAACACTGCAGAAAATCGAGGAAAATCCCTATCAGCTCGTTAAGGATGTTGAGGGAATCGGGTTTATTAAGGCGGATG
AGCTTGGCGCTAGAACAGGCATCTCAGGAAATGACCCAGAACGGATTCGCGCCGCCTTGCTATATACAGTGGAGACAGCC
AGTCTACAAGACGGTCATACGTACATACAAACGAAAGATTTGATCGTCGAAACCCGCAAGCTGCTCAACCAAACCGGCAA
TGATTACAAAGTGACTGAAATGGATGTTGCCAATCAGATCATTGCACTTGGCGAAGGAAAAGAAATGATCATTGAAGATG
ACCGCTGCTATCATCCATCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGCATTCAAAAAATCGTCTCCCAAACAGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTGCTGGCACTTGGCGAGCTGGAGGAGCGGTTAGGCGTCCAATATGCACC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCGATGCTGCTTTTAACAGGCGGGCCTGGAACAGGGAAGACGA
CGGTCATTAAAGGAATTGTCGAGCTTTACAGTGATCTTCACGGTGTTTCTCTTGATCCGAGTGATTATAAAAAAGATGAA
TCCTTCCCATTTGTGCTTGCGGCACCAACTGGACGGGCGGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTCAC
CATTCACCGGCTGCTAGGCTGGAATGGTTCGGAGGGCTTCTCTCATGATGAGGAACAGCCGATTGAAGGCAAGCTTGTCA
TTATTGATGAATCAAGTATGCTGGATATTTGGCTGGCGAATCATTTGTTTAAAGCGATTCCTGATCATATCCAAGTGATT
ATGGTAGGGGATGAACATCAGCTGCCATCTGTCGGACCAGGCCAAGTTTTACGGGATTTGCTTGCCTCAAAAGCCGTGCC
GGCTGTTACCCTGACAGATATTTACCGGCAGGCAGACGGCTCAACCATTGTTGAACTTGCACATGATATGAAAAATGGTG
TGCTGCCAAAGGATATCACTGCACGCTCAAAGGATCGGTCCTTCATTCAGTGTTCAGCTGATCAAATGAAAGAAGTCATT
GAGAAAGTTGTCAGCAATGCTGCTCAAAAAGGGTTTTCGGCAAAGGATATTCAAGTGCTGGCACCGATGTATAAAGGAAA
AGCAGGCATCAATGAGCTCAACAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAGGGCAGGGAAATCCCGTTTG
GTGATGTGGTGTACCGGACAGGTGATAAGGTGCTTCAGCTTGTGAATCAGCCGGAGAACAACATTTTTAACGGCGATATC
GGTGAAATTGTCTCGATTTTTTATGCAAAAGAAAATACAGAAAAAGAAGACATGGCTGTGATCTCCTTTGATGGAAATGA
AATCACCTTTACAAAAAAAGATTTTCATCAATTTACACATGCTTATTGCTGCTCCATTCACAAATCACAAGGAAGTGAAT
TCCCGATTGTTGTGCTGCCAGTCGTGAGGAGCTACTACCGAATGCTTCGGCGGAATCTACTGTACACAGCCATTACACGC
AGTAAAAAGTTTTTAATACTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGCGTGAAAAACAATGAGGATTCCCTCAGACA
AACGTCCTTAACGATGCGGCTAGTGCAAACCGAACAAATCATGGATGCAGAACTTGAAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCATTTGATTTTATGCATGAGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.774	100	0.8