Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACKW6F_RS08050 Genome accession   NZ_CP176527
Coordinates   1607717..1608496 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain D-62     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602717..1613496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKW6F_RS08030 (ACKW6F_08030) trmFO 1603421..1604725 (+) 1305 WP_149126666.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACKW6F_RS08035 (ACKW6F_08035) xerC 1604788..1605705 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  ACKW6F_RS08040 (ACKW6F_08040) hslV 1605720..1606265 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  ACKW6F_RS08045 (ACKW6F_08045) hslU 1606282..1607682 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  ACKW6F_RS08050 (ACKW6F_08050) codY 1607717..1608496 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACKW6F_RS08055 (ACKW6F_08055) flgB 1608785..1609174 (+) 390 WP_187470531.1 flagellar basal body rod protein FlgB -
  ACKW6F_RS08060 (ACKW6F_08060) flgC 1609174..1609626 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  ACKW6F_RS08065 (ACKW6F_08065) fliE 1609638..1609955 (+) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  ACKW6F_RS08070 (ACKW6F_08070) fliF 1610005..1611597 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  ACKW6F_RS08075 (ACKW6F_08075) fliG 1611609..1612625 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  ACKW6F_RS08080 (ACKW6F_08080) fliH 1612618..1613382 (+) 765 WP_149126664.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1080675 ACKW6F_RS08050 WP_007499612.1 1607717..1608496(+) (codY) [Bacillus safensis strain D-62]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1080675 ACKW6F_RS08050 WP_007499612.1 1607717..1608496(+) (codY) [Bacillus safensis strain D-62]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment