Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACJX3V_RS08100 Genome accession   NZ_CP176523
Coordinates   1598266..1599045 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593266..1604045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS08080 trmFO 1593953..1595260 (+) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACJX3V_RS08085 xerC 1595330..1596247 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACJX3V_RS08090 hslV 1596263..1596808 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACJX3V_RS08095 hslU 1596825..1598228 (+) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  ACJX3V_RS08100 codY 1598266..1599045 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACJX3V_RS08105 flgB 1599399..1599788 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACJX3V_RS08110 flgC 1599788..1600240 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ACJX3V_RS08115 fliE 1600251..1600571 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACJX3V_RS08120 fliF 1600614..1602224 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  ACJX3V_RS08125 fliG 1602237..1603253 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACJX3V_RS08130 fliH 1603246..1604001 (+) 756 WP_014305003.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1080606 ACJX3V_RS08100 WP_003154263.1 1598266..1599045(+) (codY) [Bacillus amyloliquefaciens strain MEPW12]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1080606 ACJX3V_RS08100 WP_003154263.1 1598266..1599045(+) (codY) [Bacillus amyloliquefaciens strain MEPW12]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment