Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC5044_RS04650 Genome accession   NZ_CP176434
Coordinates   887129..887857 (-) Length   242 a.a.
NCBI ID   WP_039628434.1    Uniprot ID   -
Organism   Campylobacter lari strain 3439-36     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882129..892857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5044_RS04610 (UPTC5044_0906) holA 882797..883762 (+) 966 WP_257928430.1 DNA polymerase III subunit delta -
  UPTC5044_RS04615 (UPTC5044_0907) rpsF 883853..884227 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC5044_RS04620 (UPTC5044_0908) - 884231..884758 (+) 528 WP_047208374.1 single-stranded DNA-binding protein -
  UPTC5044_RS04625 (UPTC5044_0909) rpsR 884770..885030 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC5044_RS04630 (UPTC5044_0910) - 885082..885723 (+) 642 WP_047208375.1 MarC family protein -
  UPTC5044_RS04635 (UPTC5044_0911) - 885705..886127 (-) 423 WP_039619645.1 hypothetical protein -
  UPTC5044_RS04640 (UPTC5044_0912) - 886124..886852 (-) 729 WP_039618525.1 type II secretion system protein -
  UPTC5044_RS04645 (UPTC5044_0913) - 886836..887132 (-) 297 WP_039628432.1 hypothetical protein -
  UPTC5044_RS04650 (UPTC5044_0914) proC 887129..887857 (-) 729 WP_039628434.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC5044_RS04655 (UPTC5044_0915) fliW 887857..888252 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC5044_RS04660 (UPTC5044_0916) bamD 888429..889085 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC5044_RS04665 (UPTC5044_0917) lon 889085..891463 (+) 2379 WP_257928431.1 endopeptidase La -
  UPTC5044_RS04670 (UPTC5044_0918) - 891474..892847 (-) 1374 WP_133318780.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26561.73 Da        Isoelectric Point: 6.7094

>NTDB_id=1080149 UPTC5044_RS04650 WP_039628434.1 887129..887857(-) (proC) [Campylobacter lari strain 3439-36]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1080149 UPTC5044_RS04650 WP_039628434.1 887129..887857(-) (proC) [Campylobacter lari strain 3439-36]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGTTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGCTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment