Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACKWPP_RS07690 Genome accession   NZ_CP176418
Coordinates   1504694..1505533 (-) Length   279 a.a.
NCBI ID   WP_409373769.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1499694..1510533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS07675 (ACKWPP_07675) uidA 1500055..1501854 (-) 1800 WP_044678794.1 beta-glucuronidase -
  ACKWPP_RS07680 (ACKWPP_07680) - 1501870..1502898 (-) 1029 WP_409373767.1 PfkB family carbohydrate kinase -
  ACKWPP_RS07685 (ACKWPP_07685) - 1502954..1504507 (-) 1554 WP_409373768.1 MFS transporter -
  ACKWPP_RS07690 (ACKWPP_07690) endA 1504694..1505533 (-) 840 WP_409373769.1 DNA/RNA non-specific endonuclease Machinery gene
  ACKWPP_RS07695 (ACKWPP_07695) - 1505563..1505754 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  ACKWPP_RS07700 (ACKWPP_07700) murA 1505747..1507030 (-) 1284 WP_409373770.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACKWPP_RS07705 (ACKWPP_07705) - 1507055..1507279 (-) 225 WP_012775178.1 DUF1146 family protein -
  ACKWPP_RS07710 (ACKWPP_07710) - 1507339..1507755 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  ACKWPP_RS07715 (ACKWPP_07715) atpD 1507765..1509171 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  ACKWPP_RS07720 (ACKWPP_07720) - 1509191..1510069 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30203.45 Da        Isoelectric Point: 6.2370

>NTDB_id=1080065 ACKWPP_RS07690 WP_409373769.1 1504694..1505533(-) (endA) [Streptococcus suis strain KKAHC02]
MAKKNVKKQAMSLLSLLATIVVVVGGYLLSDNKSSNLADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRVLDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1080065 ACKWPP_RS07690 WP_409373769.1 1504694..1505533(-) (endA) [Streptococcus suis strain KKAHC02]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGTGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACCTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCTAGTGTTCCTTATGGTGATAATAAGACAAA
AACTGTCCAGGGAGAGACGGTTCCAACCGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGTCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTT
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591

Multiple sequence alignment