Detailed information NTG1079979

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACKWCM_RS12630
• Genome accession: NZ_CP176416
• Coordinates: 2477409..2479793 (-)
• Length: 794 a.a.
• NCBI ID: WP_149126431.1
• Uniprot ID: -
• Organism: Bacillus safensis strain GUCCb3-7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2472409..2484793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKWCM_RS12595 (ACKWCM_12595)	-	2473371..2474099 (+)	729	WP_024423116.1	amino acid ABC transporter ATP-binding protein	-
ACKWCM_RS12600 (ACKWCM_12600)	-	2474113..2474922 (+)	810	WP_126681537.1	transporter substrate-binding domain-containing protein	-
ACKWCM_RS12605 (ACKWCM_12605)	-	2475000..2475653 (+)	654	WP_171464545.1	amino acid ABC transporter permease	-
ACKWCM_RS12610 (ACKWCM_12610)	-	2475669..2476319 (+)	651	WP_056767967.1	amino acid ABC transporter permease	-
ACKWCM_RS12615 (ACKWCM_12615)	-	2476423..2476554 (-)	132	WP_003216198.1	YrzQ family protein	-
ACKWCM_RS12620 (ACKWCM_12620)	-	2476575..2476766 (-)	192	WP_003216308.1	hypothetical protein	-
ACKWCM_RS12625 (ACKWCM_12625)	-	2476780..2477298 (-)	519	WP_056767970.1	hypothetical protein	-
ACKWCM_RS12630 (ACKWCM_12630)	recD2	2477409..2479793 (-)	2385	WP_149126431.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACKWCM_RS12635 (ACKWCM_12635)	-	2479813..2480466 (-)	654	WP_056767976.1	lipopolysaccharide assembly protein LapB	-
ACKWCM_RS12640 (ACKWCM_12640)	mnmA	2480526..2481644 (-)	1119	WP_024423123.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACKWCM_RS12645 (ACKWCM_12645)	-	2481739..2482881 (-)	1143	WP_044331688.1	cysteine desulfurase family protein	-
ACKWCM_RS12650 (ACKWCM_12650)	cymR	2482900..2483319 (-)	420	WP_024423125.1	cysteine metabolism transcriptional regulator CymR	-
ACKWCM_RS12655 (ACKWCM_12655)	-	2483528..2484793 (+)	1266	WP_056767979.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89073.64 Da
• Isoelectric Point: 5.2653

>NTDB_id=1079979 ACKWCM_RS12630 WP_149126431.1 2477409..2479793(-) (recD2) [Bacillus safensis strain GUCCb3-7]
MQEHPDQMKLEDEPFLKGTIQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNDYKVTEMDVANQIIALGEGKEMIIEDDRCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASKAVPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSADQMKEVI
EKVVSNAAQKGFSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTEQIMDAELEALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=1079979 ACKWCM_RS12630 WP_149126431.1 2477409..2479793(-) (recD2) [Bacillus safensis strain GUCCb3-7]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACCATTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTAAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAGGAAACCTACACTTTCTATGGCAAAGTGACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCCACTCATTTTCAAAAGGAAGTGCCGACAACGAAGCAAGGAATCATTCATTATCTCTCAAGTGATTTATT
TGAAGGGATAGGGAAAAAGACGGCTGAAGAAATCGTGGGGAAGCTTGGTAATCAGACGCTTCATAAGATTATGCGTGACC
CAGCTGTTTTGTATGATGTACCGCGCTTATCAAAAAAGAAGGCGGATAAGCTTGCCGCAGCGCTTCAGGAGCATCAAGGA
CTGGAACAAATCATGATCAGCTTGAATCAGTATGGCTTTGGTCCGCAGCTCAGCATGAAGATTTACCAAGTATACGAGAG
TGAAACACTGCAGAAAATCGAGGAAAATCCCTATCAGCTCGTTAAGGATGTTGAGGGAATCGGGTTTATTAAGGCGGATG
AGCTTGGCGCTAGAACAGGCATCTCAGGAAATGACCCAGAACGGATTCGCGCCGCCTTGCTATATACAGTGGAGACAGCC
AGTCTACAAGACGGTCATACGTACATACAAACGAAAGATTTGATCGTCGAAACCCGCAAGCTGCTCAACCAAACCGGCAA
TGATTACAAAGTGACTGAAATGGATGTTGCCAATCAGATCATTGCACTTGGCGAAGGAAAAGAAATGATCATTGAAGATG
ACCGCTGCTATCATCCATCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGCATTCAAAAAATCGTCTCCCAAACAGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTGCTAGCACTTGGCGAGCTGGAGGAGCGGTTAGGCGTCCAATATGCACC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCGATGCTGCTTTTAACAGGCGGGCCTGGAACAGGGAAGACGA
CGGTCATTAAAGGAATTGTCGAGCTTTACAGTGATCTTCACGGTGTTTCTCTTGATCCGAGTGATTATAAAAAAGATGAA
TCCTTCCCATTTGTGCTTGCGGCACCAACTGGACGGGCGGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTCAC
CATTCACCGGCTGCTAGGCTGGAATGGTTCGGAGGGCTTCTCTCATGATGAGGAACAGCCGATTGAAGGCAAGCTTGTCA
TTATTGATGAATCAAGTATGCTGGATATTTGGCTTGCGAATCATTTGTTTAAAGCCATTCCTGATCATATCCAAGTGATT
ATGGTAGGGGATGAACATCAGCTGCCATCTGTCGGACCAGGCCAAGTTTTACGGGATTTGCTTGCCTCAAAAGCCGTGCC
AGCTGTTACCCTGACAGATATTTACCGGCAGGCAGACGGCTCAACCATTGTTGAACTTGCACATGATATGAAAAATGGTG
TGCTGCCAAAGGATATCACTGCACGCTCAAAGGATCGGTCCTTCATTCAGTGTTCAGCTGATCAAATGAAAGAAGTCATT
GAGAAAGTTGTCAGCAATGCTGCTCAAAAAGGGTTTTCAGCAAAGGATATTCAAGTGCTGGCACCGATGTATAAAGGAAA
AGCAGGCATCAATGAGCTCAACAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAGGGCAGGGAAATCCCGTTTG
GTGATGTGGTGTACCGGACAGGTGATAAGGTGCTTCAGCTTGTGAATCAGCCGGAGAACAACATTTTTAACGGCGATATC
GGTGAAATTGTCTCGATTTTTTATGCAAAAGAAAATACAGAAAAAGAAGACATGGCTGTGATCTCTTTTGATGGAAATGA
AATCACCTTTACAAAAAAAGATTTTCATCAATTTACACATGCTTATTGCTGCTCCATTCACAAATCACAAGGAAGTGAAT
TCCCGATTGTTGTGCTGCCAGTCGTCAGGAGCTACTACCGAATGCTTCGGCGGAATCTGCTGTACACAGCCATTACACGC
AGTAAAAAGTTTTTAATACTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGCGTGAAAAACAATGAGGATTCCCTCAGACA
AACGTCCTTAACGATGCGGCTAGTGCAAACCGAACAAATCATGGATGCAGAACTTGAAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCGTTTGATTTTATGCATGAGTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.774	100	0.8