Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACKKE8_RS10705 Genome accession   NZ_CP176370
Coordinates   2065870..2068131 (+) Length   753 a.a.
NCBI ID   WP_409178152.1    Uniprot ID   -
Organism   Brevibacillus fortis strain LJQJ21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2060870..2073131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKKE8_RS10685 (ACKKE8_10685) - 2062092..2062265 (-) 174 WP_409178149.1 hypothetical protein -
  ACKKE8_RS10690 (ACKKE8_10690) cymR 2062363..2062782 (+) 420 WP_017247589.1 cysteine metabolism transcriptional regulator CymR -
  ACKKE8_RS10695 (ACKKE8_10695) - 2062810..2063955 (+) 1146 WP_409178150.1 cysteine desulfurase family protein -
  ACKKE8_RS10700 (ACKKE8_10700) - 2064125..2065789 (+) 1665 WP_409178151.1 methyl-accepting chemotaxis protein -
  ACKKE8_RS10705 (ACKKE8_10705) recD2 2065870..2068131 (+) 2262 WP_409178152.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACKKE8_RS10710 (ACKKE8_10710) - 2068206..2068685 (+) 480 WP_106839314.1 PRC-barrel domain-containing protein -
  ACKKE8_RS10715 (ACKKE8_10715) - 2068720..2068926 (+) 207 WP_007717618.1 hypothetical protein -
  ACKKE8_RS10720 (ACKKE8_10720) - 2068954..2069148 (+) 195 WP_409179092.1 hypothetical protein -
  ACKKE8_RS10725 (ACKKE8_10725) - 2069269..2069955 (-) 687 WP_409178153.1 TerC family protein -
  ACKKE8_RS10730 (ACKKE8_10730) - 2070335..2071399 (+) 1065 WP_409178154.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 85172.43 Da        Isoelectric Point: 5.1133

>NTDB_id=1079793 ACKKE8_RS10705 WP_409178152.1 2065870..2068131(+) (recD2) [Brevibacillus fortis strain LJQJ21]
MDEQQSISLFAETYIRGFVSQEIFYKEETWYGVIRLKIEETTESIKESEVIIVGNFPRPHPDELYTFYGEWKTHPRFGQQ
YVAKRYERETPKTLAGVERYLASGLFQGIGKKMAKRIVEQLGVDALSIIADFPERLAEVPGISEQRAKTIYDSVVEHRSL
ESAMVFLYDFGIGVNMALRIYQTYKLETMTVLKEEPYRLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFVLQEAS
YSEGHVYLPVEELCEKTLRLLEECGGHVFSGDDIQLAVEALFVSSKIAWEDERVYLPSLFFAELGLAKRLRHFAARDDFG
TFPTSEFYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPGTGKTTVIRGICRVFSQLHGLSLDLKKYNEENPFP
IVLVAPTGRAAKRMTETTGLPAMTIHRLLGYKGESFDHDAEHPIRGRLLIVDEMSMVDIWLANQLFRAVPDDMQIIMVGD
PDQLPSVGPGNVLLDMIRSGLLPLVQLTEIYRQAEESTIIRLAHDVRKGNVPADLLHTTPDRRFFTSLPQEVPEAVKQIC
FGAVKKGYTAKDVQVLAPIYKGNAGVNRLNEELQELFNPKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIV
AIFFPNENAENQEMLVAAFDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLVYTGITRSKSF
LIMCGEPDAFRAAVESDEEGVRYSYLEERLKQE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=1079793 ACKKE8_RS10705 WP_409178152.1 2065870..2068131(+) (recD2) [Brevibacillus fortis strain LJQJ21]
ATGGACGAGCAGCAGTCAATCTCGCTGTTTGCTGAAACCTACATTCGAGGATTTGTTTCTCAAGAAATTTTTTACAAGGA
AGAAACCTGGTACGGAGTTATCCGTCTAAAGATAGAAGAGACTACCGAATCGATTAAAGAATCGGAGGTCATTATTGTCG
GTAATTTTCCTCGCCCGCATCCAGATGAACTGTACACCTTTTACGGTGAATGGAAGACACACCCTCGTTTTGGCCAGCAG
TACGTAGCAAAGCGCTATGAACGTGAAACACCGAAAACATTGGCAGGGGTTGAGCGATACTTAGCCAGTGGCTTGTTTCA
AGGGATCGGAAAGAAGATGGCTAAACGGATTGTCGAGCAGCTCGGGGTAGATGCGCTGTCGATTATCGCGGACTTCCCGG
AGCGATTGGCTGAGGTACCAGGTATTTCTGAACAACGAGCCAAAACGATTTATGATTCAGTAGTCGAGCATCGTTCCTTG
GAAAGTGCCATGGTTTTCTTGTACGACTTCGGCATTGGTGTGAACATGGCGCTGCGTATTTATCAGACCTACAAGCTGGA
AACGATGACAGTGCTGAAGGAAGAGCCTTACCGGTTGATTGAGGATGTCGTAGGAATCGGCTTTAAGCGGGCAGATGACA
TTGCTCGGGCAACTGGAATCGCTGCTTCCTCAGAAGAACGTGTGAAGGCGGCGGCTCTCTTCGTTTTACAGGAGGCTTCG
TATTCAGAAGGACATGTTTATTTGCCTGTGGAGGAGCTTTGTGAAAAAACACTGCGCCTTCTTGAAGAGTGTGGGGGGCA
CGTCTTTTCTGGAGACGATATTCAACTGGCAGTGGAAGCCCTGTTTGTGTCGAGCAAAATTGCCTGGGAAGATGAGCGGG
TGTATTTGCCCTCGCTGTTTTTTGCCGAGCTCGGTCTTGCCAAAAGACTGCGTCACTTCGCTGCGCGGGATGATTTCGGT
ACGTTCCCGACATCGGAATTTTACCGTGCGTTAGGGGCGGTCGAGGATGAGCTGGGAATTACGTATGCCCAGACGCAGCG
TGATGCCATTGAACAGGCGATCAAAGCAGGTCTGATGCTTTTGACAGGGGGACCTGGTACGGGGAAAACGACAGTCATTC
GTGGGATTTGTCGGGTCTTTTCTCAGCTTCATGGATTGTCTCTGGACTTGAAAAAATACAACGAAGAAAATCCGTTCCCG
ATCGTTCTTGTGGCTCCTACTGGGCGTGCAGCAAAACGTATGACAGAGACTACGGGTTTACCGGCAATGACCATTCATCG
CTTGCTAGGTTACAAAGGGGAGAGCTTCGATCATGACGCGGAGCACCCAATCCGTGGCCGGCTATTAATTGTGGATGAAA
TGTCCATGGTCGATATCTGGCTCGCAAATCAATTGTTTCGTGCGGTCCCAGACGACATGCAGATCATTATGGTAGGTGAC
CCTGACCAGTTGCCTTCCGTAGGACCAGGCAACGTCCTATTGGATATGATTCGATCTGGATTGTTACCTCTGGTACAGCT
GACAGAAATTTATCGGCAAGCAGAAGAGTCCACCATTATTCGGTTGGCCCATGATGTACGCAAGGGGAATGTACCGGCAG
ATTTGCTTCACACCACCCCGGATCGGCGATTCTTCACAAGTTTGCCACAAGAAGTTCCGGAAGCAGTGAAACAAATTTGC
TTCGGAGCCGTAAAAAAAGGATATACGGCAAAAGATGTTCAGGTATTAGCCCCTATCTATAAAGGTAATGCCGGAGTGAA
CCGGTTGAATGAAGAATTGCAGGAGCTGTTTAATCCGAAAACGCCGCAAAAGCGAGAAGTTACTTTTGGTGAGACGACTT
TCCGTACAGGAGACAAGGTTCTGCAATTGGTGAACAATGCTGAAGAACAGGTGTTTAACGGTGACATGGGTGAGATCGTC
GCCATCTTTTTCCCGAATGAAAATGCGGAGAACCAGGAGATGCTGGTCGCTGCCTTTGATAACCGGGAAGTGGTGTACAA
GCGTTCGGATTATCATCAGCTGACGCTTGCCTACTGCTGCTCGGTTCATAAGTCTCAAGGCAGCGAATTTCCGATTGTGA
TCATGCCGTTTGTCAAGAGCTACTACCGTATGCTCAGACGTAAGCTGGTCTATACCGGGATTACCCGGAGCAAATCATTC
CTCATCATGTGTGGAGAGCCGGATGCGTTCCGTGCTGCTGTAGAGTCTGATGAGGAAGGTGTACGGTACAGTTACCTGGA
GGAACGGCTAAAGCAAGAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(342-535)

Helix-hairpin-helix domain (HHH_5)

(107-152)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.797

99.336

0.485

Multiple sequence alignment