Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACKN8U_RS04945 Genome accession   NZ_CP176035
Coordinates   1050433..1051158 (-) Length   241 a.a.
NCBI ID   WP_031822015.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2181     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1045433..1056158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8U_RS04920 (ACKN8U_04920) - 1046553..1047044 (+) 492 WP_005458943.1 type II secretion system protein M -
  ACKN8U_RS04925 (ACKN8U_04925) - 1047046..1047807 (+) 762 WP_025508208.1 type II secretion system protein N -
  ACKN8U_RS04930 (ACKN8U_04930) cysQ 1048093..1048920 (-) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACKN8U_RS04935 (ACKN8U_04935) nudE 1048961..1049530 (-) 570 WP_029810420.1 ADP compounds hydrolase NudE -
  ACKN8U_RS04940 (ACKN8U_04940) nfuA 1049751..1050335 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  ACKN8U_RS04945 (ACKN8U_04945) comF 1050433..1051158 (-) 726 WP_031822015.1 amidophosphoribosyltransferase Machinery gene
  ACKN8U_RS04950 (ACKN8U_04950) bioH 1051243..1052010 (+) 768 WP_029817775.1 pimeloyl-ACP methyl ester esterase BioH -
  ACKN8U_RS04955 (ACKN8U_04955) - 1052134..1052598 (+) 465 WP_005459035.1 hypothetical protein -
  ACKN8U_RS04960 (ACKN8U_04960) - 1052734..1055055 (-) 2322 WP_015296085.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27689.78 Da        Isoelectric Point: 8.7043

>NTDB_id=1079457 ACKN8U_RS04945 WP_031822015.1 1050433..1051158(-) (comF) [Vibrio parahaemolyticus strain L2181]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQQ
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1079457 ACKN8U_RS04945 WP_031822015.1 1050433..1051158(-) (comF) [Vibrio parahaemolyticus strain L2181]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCTCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACAA
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment