Detailed information NTG0107909

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: BSUA_RS06320
• Genome accession: NZ_CP007800
• Coordinates: 1206081..1206998 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis subsp. subtilis str. JH642 substr. AG174 strain JH642
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1201081..1211998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSUA_RS06305 (BSUA_01242)	trpS	1201661..1202653 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
BSUA_RS06310 (BSUA_01243)	oppA	1203397..1205034 (+)	1638	WP_003232957.1	oligopeptide ABC transporter substrate-binding protein OppA	-
BSUA_RS06315 (BSUA_01244)	oppB	1205142..1206077 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
BSUA_RS06320 (BSUA_01245)	amiD	1206081..1206998 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
BSUA_RS06325 (BSUA_01246)	oppD	1207003..1208079 (+)	1077	WP_014906294.1	oligopeptide ABC transporter ATP-binding protein OppD	-
BSUA_RS06330 (BSUA_01247)	oppF	1208081..1208998 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
BSUA_RS06335 (BSUA_01248)	yjbB	1209105..1210322 (+)	1218	WP_010886478.1	MFS transporter	-
BSUA_RS06340 (BSUA_01249)	yjbC	1210486..1211064 (+)	579	WP_003244921.1	GNAT family N-acetyltransferase	-
BSUA_RS06345 (BSUA_01250)	spx	1211245..1211640 (+)	396	WP_003245483.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=107909 BSUA_RS06320 WP_003232954.1 1206081..1206998(+) (amiD) [Bacillus subtilis subsp. subtilis str. JH642 substr. AG174 strain JH642]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=107909 BSUA_RS06320 WP_003232954.1 1206081..1206998(+) (amiD) [Bacillus subtilis subsp. subtilis str. JH642 substr. AG174 strain JH642]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364