Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACKQF3_RS00930 Genome accession   NZ_CP175806
Coordinates   192779..193639 (-) Length   286 a.a.
NCBI ID   WP_080115518.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 187779..198639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS00900 (ACKQF3_00900) gspL 188037..189248 (+) 1212 WP_317006885.1 type II secretion system protein GspL -
  ACKQF3_RS00905 (ACKQF3_00905) - 189258..189755 (+) 498 WP_000661347.1 type II secretion system protein M -
  ACKQF3_RS00910 (ACKQF3_00910) - 189757..190515 (+) 759 WP_317006886.1 type II secretion system protein N -
  ACKQF3_RS00915 (ACKQF3_00915) cysQ 190567..191394 (-) 828 WP_000106798.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACKQF3_RS00920 (ACKQF3_00920) nudE 191417..191965 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  ACKQF3_RS00925 (ACKQF3_00925) nfuA 192104..192691 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  ACKQF3_RS00930 (ACKQF3_00930) comF 192779..193639 (-) 861 WP_080115518.1 ComF family protein Machinery gene
  ACKQF3_RS00935 (ACKQF3_00935) bioH 193575..194336 (+) 762 WP_001240445.1 pimeloyl-ACP methyl ester esterase BioH -
  ACKQF3_RS00940 (ACKQF3_00940) - 194497..194967 (+) 471 WP_000961393.1 hypothetical protein -
  ACKQF3_RS00945 (ACKQF3_00945) - 195062..197383 (-) 2322 WP_317006887.1 Tex family protein -
  ACKQF3_RS00950 (ACKQF3_00950) greB 197628..198110 (+) 483 WP_001965872.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32514.44 Da        Isoelectric Point: 8.0588

>NTDB_id=1078956 ACKQF3_RS00930 WP_080115518.1 192779..193639(-) (comF) [Vibrio cholerae strain N19-2759]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDTVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANALNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1078956 ACKQF3_RS00930 WP_080115518.1 192779..193639(-) (comF) [Vibrio cholerae strain N19-2759]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCAACTCTCACTCC
TGTTGACCAGTGCGGGCAGTGTTTGGGCCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATACGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGCGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTTGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.601

100

0.986
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment