Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACJ9PY_RS18500 Genome accession   NZ_CP175708
Coordinates   3902197..3904572 (-) Length   791 a.a.
NCBI ID   WP_411738723.1    Uniprot ID   -
Organism   Peribacillus sp. S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3897197..3909572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ9PY_RS18485 (ACJ9PY_18485) dtd 3898718..3899161 (-) 444 WP_053535817.1 D-aminoacyl-tRNA deacylase -
  ACJ9PY_RS18490 (ACJ9PY_18490) - 3899177..3901375 (-) 2199 WP_034308787.1 RelA/SpoT family protein -
  ACJ9PY_RS18495 (ACJ9PY_18495) - 3901694..3902206 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  ACJ9PY_RS18500 (ACJ9PY_18500) recJ 3902197..3904572 (-) 2376 WP_411738723.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACJ9PY_RS18505 (ACJ9PY_18505) secDF 3904718..3906979 (-) 2262 WP_411738724.1 protein translocase subunit SecDF -
  ACJ9PY_RS18510 (ACJ9PY_18510) - 3907175..3907480 (-) 306 WP_034308797.1 post-transcriptional regulator -
  ACJ9PY_RS18515 (ACJ9PY_18515) spoVB 3907651..3909213 (+) 1563 WP_411738725.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89019.57 Da        Isoelectric Point: 4.7766

>NTDB_id=1078759 ACJ9PY_RS18500 WP_411738723.1 3902197..3904572(-) (recJ) [Peribacillus sp. S4]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSTYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEELNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVYIENELDAEQLDCFEGHLVLMDMPPS
REYLKRAVAKKNPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVEFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=1078759 ACJ9PY_RS18500 WP_411738723.1 3902197..3904572(-) (recJ) [Peribacillus sp. S4]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGACGGCGTGACATCGACCACAGTGATGATGACCGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCAATGGCATTCCGCCTTGCAG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTCGATACCGGAATTTCCGCAGTCGCTGAAGCGAAGCTTGCCGCCGAACTA
GGCATGGATTATATTTTGACCGATCACCATGAACCTGGACCGCAGCTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGACAGTACCTATCCATTTAAAGACCTTGCCGGAGTAGGGGTCGCATTTAAGCTTGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTTGAAATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCACCGAGGATCAATGCTGTCGGCCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCCGCAAGTCTCGAAGAAGCAATGGAACTTGCTAATGAAATCAATGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGCCGTGAAATGCTGCCTCATTTCGGCGGACATCCTATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCGAAGGAAGAACTGAATGAAGAAGACTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAACTTTCAAGTGTCCGTAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAAGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGACCTCG
TTTATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTACTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGCGGTTGCCAAAAAGAACCCTTCCCGTATCTACGCTCACTTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGAATTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.373

99.747

0.542

Multiple sequence alignment