Detailed information NTG1078138

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACKFA7_RS07870
• Genome accession: NZ_CP175553
• Coordinates: 1614657..1615436 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain 4-9-2
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1609657..1620436

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKFA7_RS07850 (ACKFA7_07850)	trmFO	1610344..1611651 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACKFA7_RS07855 (ACKFA7_07855)	xerC	1611721..1612638 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACKFA7_RS07860 (ACKFA7_07860)	hslV	1612654..1613199 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACKFA7_RS07865 (ACKFA7_07865)	hslU	1613216..1614619 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACKFA7_RS07870 (ACKFA7_07870)	codY	1614657..1615436 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACKFA7_RS07875 (ACKFA7_07875)	flgB	1615790..1616179 (+)	390	WP_038458008.1	flagellar basal body rod protein FlgB	-
ACKFA7_RS07880 (ACKFA7_07880)	flgC	1616179..1616631 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACKFA7_RS07885 (ACKFA7_07885)	fliE	1616642..1616962 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACKFA7_RS07890 (ACKFA7_07890)	fliF	1617005..1618615 (+)	1611	WP_038458010.1	flagellar basal-body MS-ring/collar protein FliF	-
ACKFA7_RS07895 (ACKFA7_07895)	fliG	1618628..1619644 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACKFA7_RS07900 (ACKFA7_07900)	fliH	1619637..1620392 (+)	756	WP_038458013.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1078138 ACKFA7_RS07870 WP_003154263.1 1614657..1615436(+) (codY) [Bacillus amyloliquefaciens strain 4-9-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1078138 ACKFA7_RS07870 WP_003154263.1 1614657..1615436(+) (codY) [Bacillus amyloliquefaciens strain 4-9-2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471