Detailed information NTG1078034

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACJ1CH_RS08165
• Genome accession: NZ_CP175541
• Coordinates: 1645313..1646092 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain Tcba05
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1640313..1651092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJ1CH_RS08145 (ACJ1CH_08145)	trmFO	1641000..1642307 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACJ1CH_RS08150 (ACJ1CH_08150)	xerC	1642377..1643294 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACJ1CH_RS08155 (ACJ1CH_08155)	hslV	1643310..1643855 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACJ1CH_RS08160 (ACJ1CH_08160)	hslU	1643872..1645275 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACJ1CH_RS08165 (ACJ1CH_08165)	codY	1645313..1646092 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACJ1CH_RS08170 (ACJ1CH_08170)	flgB	1646446..1646835 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACJ1CH_RS08175 (ACJ1CH_08175)	flgC	1646835..1647287 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACJ1CH_RS08180 (ACJ1CH_08180)	fliE	1647298..1647618 (+)	321	WP_003154258.1	flagellar hook-basal body complex protein FliE	-
ACJ1CH_RS08185 (ACJ1CH_08185)	fliF	1647661..1649271 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACJ1CH_RS08190 (ACJ1CH_08190)	fliG	1649284..1650300 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACJ1CH_RS08195 (ACJ1CH_08195)	fliH	1650293..1651048 (+)	756	WP_003154255.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1078034 ACJ1CH_RS08165 WP_003154263.1 1645313..1646092(+) (codY) [Bacillus velezensis strain Tcba05]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1078034 ACJ1CH_RS08165 WP_003154263.1 1645313..1646092(+) (codY) [Bacillus velezensis strain Tcba05]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471