Detailed information NTG1077717

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACJGE4_RS08385
• Genome accession: NZ_CP174519
• Coordinates: 1657761..1658540 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JD-3
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1652761..1663540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJGE4_RS08365 (ACJGE4_08365)	trmFO	1653448..1654755 (+)	1308	WP_094031705.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACJGE4_RS08370 (ACJGE4_08370)	xerC	1654825..1655742 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
ACJGE4_RS08375 (ACJGE4_08375)	hslV	1655758..1656303 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ACJGE4_RS08380 (ACJGE4_08380)	hslU	1656320..1657723 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACJGE4_RS08385 (ACJGE4_08385)	codY	1657761..1658540 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACJGE4_RS08390 (ACJGE4_08390)	flgB	1658894..1659283 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACJGE4_RS08395 (ACJGE4_08395)	flgC	1659283..1659735 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
ACJGE4_RS08400 (ACJGE4_08400)	fliE	1659746..1660066 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACJGE4_RS08405 (ACJGE4_08405)	fliF	1660109..1661719 (+)	1611	WP_076424137.1	flagellar basal-body MS-ring/collar protein FliF	-
ACJGE4_RS08410 (ACJGE4_08410)	fliG	1661732..1662748 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACJGE4_RS08415 (ACJGE4_08415)	fliH	1662741..1663496 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1077717 ACJGE4_RS08385 WP_003154263.1 1657761..1658540(+) (codY) [Bacillus velezensis strain JD-3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1077717 ACJGE4_RS08385 WP_003154263.1 1657761..1658540(+) (codY) [Bacillus velezensis strain JD-3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471