Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACJED4_RS14195 Genome accession   NZ_CP174518
Coordinates   2739816..2740595 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain G03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2734816..2745595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS14165 fliH 2734929..2735693 (-) 765 WP_048002828.1 flagellar assembly protein FliH -
  ACJED4_RS14170 fliG 2735686..2736702 (-) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  ACJED4_RS14175 fliF 2736714..2738306 (-) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  ACJED4_RS14180 fliE 2738357..2738674 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ACJED4_RS14185 flgC 2738686..2739138 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  ACJED4_RS14190 flgB 2739138..2739527 (-) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  ACJED4_RS14195 codY 2739816..2740595 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACJED4_RS14200 hslU 2740630..2742030 (-) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  ACJED4_RS14205 hslV 2742047..2742592 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  ACJED4_RS14210 xerC 2742607..2743524 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  ACJED4_RS14215 trmFO 2743587..2744891 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1077662 ACJED4_RS14195 WP_007499612.1 2739816..2740595(-) (codY) [Bacillus altitudinis strain G03]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1077662 ACJED4_RS14195 WP_007499612.1 2739816..2740595(-) (codY) [Bacillus altitudinis strain G03]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment