Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACJED4_RS09760 Genome accession   NZ_CP174518
Coordinates   1900783..1903116 (+) Length   777 a.a.
NCBI ID   WP_407968769.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895783..1908116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS09740 - 1896990..1897286 (+) 297 WP_003216788.1 post-transcriptional regulator -
  ACJED4_RS09745 secDF 1897328..1899556 (+) 2229 WP_081114279.1 protein translocase subunit SecDF -
  ACJED4_RS09750 - 1899757..1900245 (+) 489 WP_008342734.1 cation:proton antiporter regulatory subunit -
  ACJED4_RS09755 - 1900345..1900701 (+) 357 WP_017358117.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACJED4_RS09760 recJ 1900783..1903116 (+) 2334 WP_407968769.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACJED4_RS09765 - 1903140..1903652 (+) 513 WP_008342729.1 adenine phosphoribosyltransferase -
  ACJED4_RS09770 - 1903795..1906005 (+) 2211 WP_008342726.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACJED4_RS09775 dtd 1906024..1906467 (+) 444 WP_008342725.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87642.43 Da        Isoelectric Point: 4.8566

>NTDB_id=1077649 ACJED4_RS09760 WP_407968769.1 1900783..1903116(+) (recJ) [Bacillus altitudinis strain G03]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVQRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEEQ
ESIVIFGDYDADGVTSTSVLLHTLKERSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPVELLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSRRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEDMDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEETGADQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLQADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVNEMTVQAIEEVGLLSPFGMQN
PKPFIMIEDAQLEDIRTIGANQNHIKMSLKDEDKLLDCVGFHQGKLKEELVPGSQISVVGEVSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKKVSTLDPAKTMVFCFDEETKRQSELVDIPIHLIDAENVSTFNVQEKYVIFADVPADEHLLKL
LLENQQPARIYTVFQRKEDHFMSSFPSRDQFKWFYGFLFKRGSFPIKEQGMELAKHRGWTKDTIIFMTKVFFELGFVKIE
NGVLSIVRDAPKKDLTASSSYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=1077649 ACJED4_RS09760 WP_407968769.1 1900783..1903116(+) (recJ) [Bacillus altitudinis strain G03]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCTAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCACTTCTTGTACAAAGAGGGCTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTCTTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAAGAGCAG
GAATCGATTGTGATCTTCGGAGATTATGATGCAGATGGTGTGACAAGTACGTCTGTACTTTTACATACACTTAAAGAACG
ATCTGCGAAGGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGATATGGGCCAAACGAACAGGCTTTCCGATATATCA
AAGAGCAAGGAGCATCGCTTGTTATCACCGTGGATACAGGGATCGCTGCTGTAAATGAAGCACGTATTGCAAAAGAAATA
GGATTAGACCTGATCATCACAGATCACCATGAACCAAGCGAGGAACTGCCTGAGGCACTTGCGATTGTACATCCTAAGCA
GCCTGGGTGTGAGTATCCGTTTAAAGAGCTGGCGGGTGTCGGTGTTGCGTTTAAAGTGGCACATGCACTCCTTGGTAAAC
TCCCAGTAGAATTATTAGATCTTGCTGCAATCGGTACAATTGCGGATCTTGTCCCGTTGCATGATGAAAATAGATGGCTT
GCAAAAAAAGGCTTAATGCAGCTTCGTCAATCTAGACGGCCTGGGTTAAAAGCGTTATTAAAAGAAGCAGGCGCCACTCT
TGAAGAAGCAAATGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTTGGACGAATTGAGCAGGCAGATC
CGGCTGTTCATCTTCTCATGACTGAGGATATGGATGAAGCAGAAGAACTCGCTCGTTTTGTACAAGAATTGAACAAAGAA
CGGCAGAAAATTGTGAGTACGATCACGGAAGAAGCCATTCAAATGGTCGAAGAGACAGGTGCGGACCAGTCTGCTATCGT
CGTAGCAAAAGCTGGCTGGAATCCAGGCGTTGTCGGCATTGTTGCCTCAAAATTGACGGATACATTTTCTCGTCCGGCGA
TTGTGCTTGGAATAGATGAAGAAACGCAGATGGCGAAAGGGTCAGCTCGAAGTATTCCTGGCTTTGATTTATTTTTCCAT
TTGAGCAAGTGCCGTGACATCCTGCCGCATTTCGGTGGACACCCGATGGCAGCAGGAATGACACTTCAAGCGGATGATGT
TCCTTTACTTAGGGAAAGATTGAATCAATATGCAAATGAAACGTTGACAGAAGAAGATTTTATTCCAATTCAACGGGTCG
ATGCAGTATGTAAAGTGAACGAAATGACGGTGCAAGCCATTGAAGAAGTGGGACTGCTGTCCCCGTTTGGCATGCAGAAT
CCTAAGCCGTTCATTATGATTGAAGACGCCCAGCTTGAAGACATCCGAACGATCGGGGCCAATCAAAATCACATTAAAAT
GTCACTGAAAGACGAAGACAAGCTGCTCGACTGTGTCGGTTTTCACCAAGGCAAACTAAAAGAAGAACTTGTCCCAGGGA
GTCAAATCTCTGTCGTTGGCGAGGTCTCGATTAATGAATGGAATAACCGAAAGAAACCTCAGCTCATGCTAAAAGACGCT
AGAGTCGATGAATGGCAGCTGTTTGATTTACGCGGGAAAAAAGATTGGGAAAAGAAAGTATCAACACTTGATCCAGCAAA
AACGATGGTCTTCTGTTTTGACGAAGAAACAAAAAGGCAATCGGAGCTGGTGGATATTCCGATTCACCTTATTGATGCAG
AAAATGTATCCACGTTTAATGTGCAGGAAAAGTATGTGATCTTTGCCGATGTTCCTGCCGATGAACACTTGCTCAAGCTG
CTTTTAGAAAACCAACAACCAGCAAGAATTTATACGGTGTTTCAGCGGAAAGAAGATCACTTTATGTCCTCATTCCCGAG
CCGTGATCAATTCAAATGGTTTTATGGGTTCTTGTTCAAACGGGGAAGTTTTCCTATTAAAGAACAAGGCATGGAGCTTG
CCAAACATAGAGGTTGGACAAAAGATACAATCATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAG
AATGGTGTGCTGTCAATAGTGCGTGATGCCCCTAAAAAAGATTTAACCGCATCATCGTCTTATACAGCAAAACAACGATT
GATGGAACTCGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCT
CACCTGTGCTTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(314-437)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.053

100

0.671

Multiple sequence alignment